Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr14 93183733 . T A CCDS9904.1:NM_001008530.2:c.310Act>Tct_NP_001008530.1:p.104T>S Homo sapiens legumain (LGMN), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4fgu 1 Q99538 99.52 0.0 X-RAY
 2013-07-03 THR A:92 A:104 52.0 0.371 -130.8 162.3 52.0 0.371 0.0 HOH
 8.953
 O
 O
THR B:92 B:104 46.0 0.329 E -140.2 165.8 NA NA NA
4nok 1 O89017 83.1 0.0 X-RAY
 2014-02-19 THR A:106 A:106 47.0 0.336 -129.7 171.1 47.0 0.336 0.0 HOH
 2.729
 N
 O
4nom 1 O89017 83.1 0.0 X-RAY
 2014-02-19 THR A:106 A:106 42.0 0.3 -135.4 172.5 42.0 0.3 0.0 HOH
 2.946
 OG1
 O
4nol 1 O89017 82.87 0.0 X-RAY
 2014-02-19 THR A:106 A:106 47.0 0.336 -150.0 150.0 47.0 0.336 0.0 HOH
 3.268
 CG2
 O
THR B:106 B:106 50.0 0.357 -141.3 156.0 NA NA NA
4d3y 1 G3I1H5 84.8 0.0 X-RAY
 2016-01-20 THR A:79 A:109 52.0 0.371 -126.1 170.5 52.0 0.371 0.0 HOH
 2.852
 N
 O
4d3z 1 G3I1H5 84.8 0.0 X-RAY
 2016-01-20 THR A:79 A:109 41.0 0.293 -130.6 172.5 41.0 0.293 0.0 HOH
 2.968
 N
 O
4aw9 1 Q99538 99.65 0.0 X-RAY
 2013-06-26 THR A:79 A:104 41.0 0.293 -128.2 170.0 41.0 0.293 0.0 HOH
 2.696
 OG1
 O
4awa 1 Q99538 99.65 0.0 X-RAY
 2013-06-26 THR A:79 A:104 43.0 0.307 -127.5 159.0 43.0 0.307 0.0 HOH
 4.256
 O
 O
4awb 1 Q99538 99.65 0.0 X-RAY
 2013-06-26 THR A:79 A:104 44.0 0.314 -127.8 161.9 44.0 0.314 0.0 HOH
 3.250
 N
 O
THR B:79 B:104 42.0 0.3 -125.6 165.6 42.0 0.3 0.0 HOH
 3.045
 OG1
 O
4n6n 1 Q99538 99.28 0.0 X-RAY
 2015-02-18 THR A:79 A:104 41.0 0.293 -130.1 170.3 41.0 0.293 0.0 HOH
 2.778
 OG1
 O
4n6o 1 Q99538 99.28 0.0 X-RAY
 2015-02-11 THR A:79 A:104 41.0 0.293 -130.5 169.3 41.0 0.293 0.0 HOH
 2.733
 OG1
 O
5lu8 2 Q99538 99.24 0.0 X-RAY
 2017-03-29 THR B:79 A:104 41.0 0.293 -133.8 172.0 41.0 0.293 0.0 HOH
 3.125
 OG1
 O
5lu9 2 Q99538 99.24 0.0 X-RAY
 2017-03-29 THR B:79 A:104 41.0 0.293 -130.6 173.3 41.0 0.293 0.0 HOH
 7.377
 CA
 O
5lua 1 Q99538 99.24 0.0 X-RAY
 2017-03-29 THR A:79 A:104 40.0 0.286 -132.2 170.9 40.0 0.286 0.0 HOH
 2.837
 N
 O
THR B:79 B:104 44.0 0.314 -128.1 174.3 NA NA NA
5lub 1 Q99538 99.24 0.0 X-RAY
 2017-03-29 THR A:79 B:104 44.0 0.314 -127.2 171.8 NA NA NA
THR B:79 A:104 40.0 0.286 -132.9 171.7 40.0 0.286 0.0 HOH
 2.815
 O
 O
7o50 1 Q99538 99.24 0.0 X-RAY
 2021-09-22 THR A:79 A:104 41.0 0.293 -133.0 172.0 41.0 0.293 0.0 HOH
 2.675
 OG1
 O
THR B:79 B:104 40.0 0.286 -133.0 178.7 NA NA NA
4d3x 1 G3I1H5 89.79 0.0 X-RAY
 2016-01-20 THR A:79 A:109 39.0 0.279 -129.5 173.8 39.0 0.279 0.0 HOH
 2.750
 N
 O
4noj 1 O89017 92.4 0.0 X-RAY
 2014-02-19 THR A:80 A:106 43.0 0.307 -141.0 172.2 43.0 0.307 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q99538-f1 1 Q99538 100.0 0.0 THR A:104 A:104 43.0 0.307 -134.4 161.3