Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr14 93185114 . C A CCDS9904.1:NM_001008530.2:c.214Gat>Tat_NP_001008530.1:p.72D>Y Homo sapiens legumain (LGMN), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4fgu 1 Q99538 99.52 0.0 X-RAY
 2013-07-03 ASP A:60 A:72 38.0 0.253 64.5 28.9 38.0 0.253 0.0
ASP B:60 B:72 36.0 0.24 68.9 14.9 NA NA NA
4nok 1 O89017 83.1 0.0 X-RAY
 2014-02-19 ASP A:74 A:74 46.0 0.307 68.6 46.2 46.0 0.307 0.0 HOH
 2.625
 OD1
 O
4nom 1 O89017 83.1 0.0 X-RAY
 2014-02-19 ASP A:74 A:74 31.0 0.207 73.2 36.2 31.0 0.207 0.0 HOH
 2.690
 OD1
 O
4nol 1 O89017 82.87 0.0 X-RAY
 2014-02-19 ASP A:74 A:74 31.0 0.207 62.6 52.8 31.0 0.207 0.0 HOH
 2.481
 OD2
 O
ASP B:74 B:74 26.0 0.173 64.8 38.8 NA NA NA
4d3y 1 G3I1H5 84.8 0.0 X-RAY
 2016-01-20 ASP A:47 A:77 25.0 0.167 68.2 38.4 25.0 0.167 0.0 HOH
 2.787
 OD1
 O
4d3z 1 G3I1H5 84.8 0.0 X-RAY
 2016-01-20 ASP A:47 A:77 44.0 0.293 71.9 38.9 44.0 0.293 0.0 HOH
 3.727
 CA
 O
4aw9 1 Q99538 99.65 0.0 X-RAY
 2013-06-26 ASP A:47 A:72 40.0 0.267 78.3 33.7 40.0 0.267 0.0 HOH
 2.796
 OD2
 O
4awa 1 Q99538 99.65 0.0 X-RAY
 2013-06-26 ASP A:47 A:72 44.0 0.293 72.8 43.7 44.0 0.293 0.0 HOH
 2.906
 OD1
 O
4awb 1 Q99538 99.65 0.0 X-RAY
 2013-06-26 ASP A:47 A:72 35.0 0.233 73.8 26.6 35.0 0.233 0.0 HOH
 3.040
 OD2
 O
ASP B:47 B:72 42.0 0.28 73.4 37.0 42.0 0.28 0.0 HOH
 3.795
 OD1
 O
4n6n 1 Q99538 99.28 0.0 X-RAY
 2015-02-18 ASP A:47 A:72 37.0 0.247 70.9 38.4 37.0 0.247 0.0 HOH
 2.875
 OD1
 O
4n6o 1 Q99538 99.28 0.0 X-RAY
 2015-02-11 ASP A:47 A:72 38.0 0.253 71.9 39.6 38.0 0.253 0.0 HOH
 2.861
 OD2
 O
5lu8 2 Q99538 99.24 0.0 X-RAY
 2017-03-29 ASP B:47 A:72 42.0 0.28 79.2 36.3 42.0 0.28 0.0 HOH
 2.784
 OD2
 O
5lu9 2 Q99538 99.24 0.0 X-RAY
 2017-03-29 ASP B:47 A:72 41.0 0.273 83.3 28.9 41.0 0.273 0.0 HOH
 2.620
 O
 O
5lua 1 Q99538 99.24 0.0 X-RAY
 2017-03-29 ASP A:47 A:72 45.0 0.3 72.2 38.6 45.0 0.3 0.0 HOH
 2.939
 OD1
 O
ASP B:47 B:72 41.0 0.273 73.9 36.3 NA NA NA
5lub 1 Q99538 99.24 0.0 X-RAY
 2017-03-29 ASP A:47 B:72 40.0 0.267 71.4 36.6 NA NA NA
ASP B:47 A:72 45.0 0.3 73.7 38.3 45.0 0.3 0.0 HOH
 2.757
 OD2
 O
7o50 1 Q99538 99.24 0.0 X-RAY
 2021-09-22 ASP A:47 A:72 43.0 0.287 67.9 40.6 43.0 0.287 0.0 HOH
 2.479
 OD1
 O
ASP B:47 B:72 41.0 0.273 73.4 33.3 NA NA NA
4d3x 1 G3I1H5 89.79 0.0 X-RAY
 2016-01-20 ASP A:47 A:77 35.0 0.233 71.8 40.3 35.0 0.233 0.0 HOH
 2.557
 OD1
 O
4noj 1 O89017 92.4 0.0 X-RAY
 2014-02-19 ASP A:48 A:74 33.0 0.22 73.7 11.1 33.0 0.22 0.0 HOH
 6.935
 OD1
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q99538-f1 1 Q99538 100.0 0.0 ASP A:72 A:72 43.0 0.287 68.6 32.5