Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr14 93185126 . C A CCDS9904.1:NM_001008530.2:c.202Gtg>Ttg_NP_001008530.1:p.68V>L Homo sapiens legumain (LGMN), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4fgu 1 Q99538 99.52 0.0 X-RAY
 2013-07-03 VAL A:56 A:68 7.0 0.045 E -106.5 146.6 7.0 0.045 0.0
VAL B:56 B:68 5.0 0.032 E -102.1 141.5 NA NA NA
4nok 1 O89017 83.1 0.0 X-RAY
 2014-02-19 VAL A:70 A:70 0.0 0.0 E -116.1 127.0 0.0 0.0 0.0 HOH
 7.460
 CG1
 O
4nom 1 O89017 83.1 0.0 X-RAY
 2014-02-19 VAL A:70 A:70 2.0 0.013 E -109.0 129.3 2.0 0.013 0.0 HOH
 7.478
 CG1
 O
4nol 1 O89017 82.87 0.0 X-RAY
 2014-02-19 VAL A:70 A:70 0.0 0.0 E -119.5 121.2 0.0 0.0 0.0 HOH
 7.658
 CG1
 O
VAL B:70 B:70 0.0 0.0 E -117.3 129.4 NA NA NA
4d3y 1 G3I1H5 84.8 0.0 X-RAY
 2016-01-20 VAL A:43 A:73 0.0 0.0 E -112.0 124.2 0.0 0.0 0.0 HOH
 7.553
 O
 O
4d3z 1 G3I1H5 84.8 0.0 X-RAY
 2016-01-20 VAL A:43 A:73 0.0 0.0 E -114.5 126.2 0.0 0.0 0.0 HOH
 7.231
 O
 O
4aw9 1 Q99538 99.65 0.0 X-RAY
 2013-06-26 VAL A:43 A:68 0.0 0.0 E -107.1 122.4 0.0 0.0 0.0 HOH
 4.825
 N
 O
4awa 1 Q99538 99.65 0.0 X-RAY
 2013-06-26 VAL A:43 A:68 0.0 0.0 E -107.3 122.9 0.0 0.0 0.0 HOH
 5.059
 N
 O
4awb 1 Q99538 99.65 0.0 X-RAY
 2013-06-26 VAL A:43 A:68 0.0 0.0 E -112.3 118.9 0.0 0.0 0.0 HOH
 7.627
 O
 O
VAL B:43 B:68 0.0 0.0 E -118.8 114.5 0.0 0.0 0.0 HOH
 6.233
 N
 O
4n6n 1 Q99538 99.28 0.0 X-RAY
 2015-02-18 VAL A:43 A:68 0.0 0.0 E -108.5 124.8 0.0 0.0 0.0 HOH
 4.903
 N
 O
4n6o 1 Q99538 99.28 0.0 X-RAY
 2015-02-11 VAL A:43 A:68 0.0 0.0 E -110.5 125.7 0.0 0.0 0.0 HOH
 7.232
 N
 O
5lu8 2 Q99538 99.24 0.0 X-RAY
 2017-03-29 VAL B:43 A:68 0.0 0.0 E -109.8 123.2 0.0 0.0 0.0 HOH
 4.902
 N
 O
5lu9 2 Q99538 99.24 0.0 X-RAY
 2017-03-29 VAL B:43 A:68 0.0 0.0 E -111.8 120.0 0.0 0.0 0.0 HOH
 4.706
 N
 O
5lua 1 Q99538 99.24 0.0 X-RAY
 2017-03-29 VAL A:43 A:68 0.0 0.0 E -112.0 124.4 0.0 0.0 0.0 HOH
 4.928
 N
 O
VAL B:43 B:68 0.0 0.0 E -109.0 120.2 NA NA NA
5lub 1 Q99538 99.24 0.0 X-RAY
 2017-03-29 VAL A:43 B:68 0.0 0.0 E -105.4 124.6 NA NA NA
VAL B:43 A:68 0.0 0.0 E -111.2 122.6 0.0 0.0 0.0 HOH
 4.874
 N
 O
7o50 1 Q99538 99.24 0.0 X-RAY
 2021-09-22 VAL A:43 A:68 0.0 0.0 E -112.3 126.9 0.0 0.0 0.0 HOH
 2.729
 O
 O
VAL B:43 B:68 0.0 0.0 E -111.7 128.6 NA NA NA
4d3x 1 G3I1H5 89.79 0.0 X-RAY
 2016-01-20 VAL A:43 A:73 0.0 0.0 E -111.8 127.5 0.0 0.0 0.0 HOH
 6.891
 N
 O
4noj 1 O89017 92.4 0.0 X-RAY
 2014-02-19 VAL A:44 A:70 2.0 0.013 E -108.2 114.9 2.0 0.013 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q99538-f1 1 Q99538 100.0 0.0 VAL A:68 A:68 0.0 0.0 E -114.3 125.1