Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr14 93185129 . C A CCDS9904.1:NM_001008530.2:c.199Gtt>Ttt_NP_001008530.1:p.67V>F Homo sapiens legumain (LGMN), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4fgu 1 Q99538 99.52 0.0 X-RAY
 2013-07-03 VAL A:55 A:67 3.0 0.019 E -122.9 119.6 3.0 0.019 0.0
VAL B:55 B:67 2.0 0.013 E -133.5 114.4 NA NA NA
4nok 1 O89017 83.1 0.0 X-RAY
 2014-02-19 ILE A:69 A:69 0.0 0.0 E -115.6 126.8 0.0 0.0 0.0 HOH
 6.772
 CD1
 O
4nom 1 O89017 83.1 0.0 X-RAY
 2014-02-19 ILE A:69 A:69 0.0 0.0 E -120.5 119.6 0.0 0.0 0.0 HOH
 5.896
 CD1
 O
4nol 1 O89017 82.87 0.0 X-RAY
 2014-02-19 ILE A:69 A:69 0.0 0.0 E -113.8 126.1 0.0 0.0 0.0 HOH
 9.638
 CD1
 O
ILE B:69 B:69 0.0 0.0 E -127.9 127.3 NA NA NA
4d3y 1 G3I1H5 84.8 0.0 X-RAY
 2016-01-20 ILE A:42 A:72 0.0 0.0 E -120.7 119.7 0.0 0.0 0.0 HOH
 9.034
 N
 O
4d3z 1 G3I1H5 84.8 0.0 X-RAY
 2016-01-20 ILE A:42 A:72 0.0 0.0 E -122.5 122.0 0.0 0.0 0.0 HOH
 9.029
 C
 O
4aw9 1 Q99538 99.65 0.0 X-RAY
 2013-06-26 VAL A:42 A:67 0.0 0.0 E -119.4 115.0 0.0 0.0 0.0 HOH
 4.546
 N
 O
4awa 1 Q99538 99.65 0.0 X-RAY
 2013-06-26 VAL A:42 A:67 1.0 0.006 E -119.2 112.8 1.0 0.006 0.0 HOH
 4.831
 N
 O
4awb 1 Q99538 99.65 0.0 X-RAY
 2013-06-26 VAL A:42 A:67 1.0 0.006 E -114.9 121.1 1.0 0.006 0.0 HOH
 6.424
 CG2
 O
VAL B:42 B:67 0.0 0.0 E -114.3 122.1 0.0 0.0 0.0 HOH
 5.153
 N
 O
4n6n 1 Q99538 99.28 0.0 X-RAY
 2015-02-18 VAL A:42 A:67 1.0 0.006 E -114.5 118.5 1.0 0.006 0.0 HOH
 4.673
 N
 O
4n6o 1 Q99538 99.28 0.0 X-RAY
 2015-02-11 VAL A:42 A:67 0.0 0.0 E -109.9 120.2 0.0 0.0 0.0 HOH
 6.718
 CG2
 O
5lu8 2 Q99538 99.24 0.0 X-RAY
 2017-03-29 VAL B:42 A:67 0.0 0.0 E -119.3 119.9 0.0 0.0 0.0 HOH
 4.522
 N
 O
5lu9 2 Q99538 99.24 0.0 X-RAY
 2017-03-29 VAL B:42 A:67 1.0 0.006 E -118.1 118.1 1.0 0.006 0.0 HOH
 4.338
 N
 O
5lua 1 Q99538 99.24 0.0 X-RAY
 2017-03-29 VAL A:42 A:67 1.0 0.006 E -115.8 120.3 1.0 0.006 0.0 HOH
 4.599
 N
 O
VAL B:42 B:67 2.0 0.013 E -121.9 114.8 NA NA NA
5lub 1 Q99538 99.24 0.0 X-RAY
 2017-03-29 VAL A:42 B:67 0.0 0.0 E -125.9 114.8 NA NA NA
VAL B:42 A:67 1.0 0.006 E -117.8 117.8 1.0 0.006 0.0 HOH
 4.548
 N
 O
7o50 1 Q99538 99.24 0.0 X-RAY
 2021-09-22 VAL A:42 A:67 1.0 0.006 E -115.1 121.4 1.0 0.006 0.0 HOH
 4.440
 N
 O
VAL B:42 B:67 1.0 0.006 E -123.1 120.6 NA NA NA
4d3x 1 G3I1H5 89.79 0.0 X-RAY
 2016-01-20 ILE A:42 A:72 0.0 0.0 E -115.4 125.3 0.0 0.0 0.0 HOH
 7.197
 CA
 O
4noj 1 O89017 92.4 0.0 X-RAY
 2014-02-19 ILE A:43 A:69 0.0 0.0 E -113.1 114.1 0.0 0.0 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q99538-f1 1 Q99538 100.0 0.0 VAL A:67 A:67 0.0 0.0 E -112.8 124.0