Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr14 | 93185183 | . | C | A | CCDS9904.1:NM_001008530.2:c.145Gcg>Tcg_NP_001008530.1:p.49A>S | Homo sapiens legumain (LGMN), transcript variant 1, mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
4fgu | 1 | Q99538 | 99.52 | 0.0 |
X-RAY |
2013-07-03 | ALA | A:37 | A:49 | 8.0 | 0.07 | H | -65.5 | -38.5 | 8.0 | 0.07 | 0.0 | ||||||
ALA | B:37 | B:49 | 7.0 | 0.061 | H | -73.7 | -34.1 | NA | NA | NA | |||||||||||||
4nok | 1 | O89017 | 83.1 | 0.0 |
X-RAY |
2014-02-19 | ALA | A:51 | A:51 | 0.0 | 0.0 | H | -60.7 | -45.0 | 0.0 | 0.0 | 0.0 |
HOH |
6.683 |
CB |
O |
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4nom | 1 | O89017 | 83.1 | 0.0 |
X-RAY |
2014-02-19 | ALA | A:51 | A:51 | 0.0 | 0.0 | H | -64.2 | -37.9 | 0.0 | 0.0 | 0.0 |
HOH |
6.772 |
CB |
O |
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4nol | 1 | O89017 | 82.87 | 0.0 |
X-RAY |
2014-02-19 | ALA | A:51 | A:51 | 1.0 | 0.009 | H | -63.3 | -47.5 | 1.0 | 0.009 | 0.0 |
HOH |
6.657 |
CB |
O |
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ALA | B:51 | B:51 | 0.0 | 0.0 | H | -57.1 | -47.4 | NA | NA | NA | |||||||||||||
4d3y | 1 | G3I1H5 | 84.8 | 0.0 |
X-RAY |
2016-01-20 | ALA | A:24 | A:54 | 1.0 | 0.009 | H | -62.0 | -49.9 | 1.0 | 0.009 | 0.0 |
HOH |
7.053 |
CB |
O |
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4d3z | 1 | G3I1H5 | 84.8 | 0.0 |
X-RAY |
2016-01-20 | ALA | A:24 | A:54 | 0.0 | 0.0 | H | -65.6 | -48.7 | 0.0 | 0.0 | 0.0 |
HOH |
6.656 |
CB |
O |
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4aw9 | 1 | Q99538 | 99.65 | 0.0 |
X-RAY |
2013-06-26 | ALA | A:24 | A:49 | 0.0 | 0.0 | H | -63.2 | -42.3 | 0.0 | 0.0 | 0.0 |
HOH |
6.560 |
CB |
O |
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4awa | 1 | Q99538 | 99.65 | 0.0 |
X-RAY |
2013-06-26 | ALA | A:24 | A:49 | 0.0 | 0.0 | H | -64.4 | -40.4 | 0.0 | 0.0 | 0.0 |
HOH |
6.670 |
CB |
O |
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4awb | 1 | Q99538 | 99.65 | 0.0 |
X-RAY |
2013-06-26 | ALA | A:24 | A:49 | 0.0 | 0.0 | H | -54.2 | -47.6 | 0.0 | 0.0 | 0.0 |
HOH |
9.421 |
O |
O |
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ALA | B:24 | B:49 | 0.0 | 0.0 | H | -72.8 | -43.5 | 0.0 | 0.0 | 0.0 |
HOH |
6.845 |
CB |
O |
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4n6n | 1 | Q99538 | 99.28 | 0.0 |
X-RAY |
2015-02-18 | ALA | A:24 | A:49 | 0.0 | 0.0 | H | -62.3 | -40.6 | 0.0 | 0.0 | 0.0 |
HOH |
6.806 |
CB |
O |
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4n6o | 1 | Q99538 | 99.28 | 0.0 |
X-RAY |
2015-02-11 | ALA | A:24 | A:49 | 0.0 | 0.0 | H | -60.2 | -41.2 | 0.0 | 0.0 | 0.0 |
HOH |
6.801 |
CB |
O |
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5lu8 | 2 | Q99538 | 99.24 | 0.0 |
X-RAY |
2017-03-29 | ALA | B:24 | A:49 | 0.0 | 0.0 | H | -65.6 | -45.2 | 0.0 | 0.0 | 0.0 |
HOH |
6.715 |
CB |
O |
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5lu9 | 2 | Q99538 | 99.24 | 0.0 |
X-RAY |
2017-03-29 | ALA | B:24 | A:49 | 0.0 | 0.0 | H | -65.0 | -39.1 | 0.0 | 0.0 | 0.0 |
HOH |
7.065 |
CB |
O |
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5lua | 1 | Q99538 | 99.24 | 0.0 |
X-RAY |
2017-03-29 | ALA | A:24 | A:49 | 0.0 | 0.0 | H | -61.5 | -44.6 | 0.0 | 0.0 | 0.0 |
HOH |
6.760 |
CB |
O |
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ALA | B:24 | B:49 | 0.0 | 0.0 | H | -58.4 | -42.5 | NA | NA | NA | |||||||||||||
5lub | 1 | Q99538 | 99.24 | 0.0 |
X-RAY |
2017-03-29 | ALA | A:24 | B:49 | 0.0 | 0.0 | H | -59.7 | -43.2 | NA | NA | NA | ||||||
ALA | B:24 | A:49 | 0.0 | 0.0 | H | -60.2 | -44.5 | 0.0 | 0.0 | 0.0 |
HOH |
6.794 |
CB |
O |
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7o50 | 1 | Q99538 | 99.24 | 0.0 |
X-RAY |
2021-09-22 | ALA | A:24 | A:49 | 0.0 | 0.0 | H | -65.6 | -43.1 | 0.0 | 0.0 | 0.0 |
HOH |
6.887 |
CB |
O |
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ALA | B:24 | B:49 | 0.0 | 0.0 | H | -64.0 | -42.0 | NA | NA | NA | |||||||||||||
4d3x | 1 | G3I1H5 | 89.79 | 0.0 |
X-RAY |
2016-01-20 | ALA | A:24 | A:54 | 0.0 | 0.0 | H | -62.1 | -40.8 | 0.0 | 0.0 | 0.0 |
HOH |
6.912 |
CB |
O |
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4noj | 1 | O89017 | 92.4 | 0.0 |
X-RAY |
2014-02-19 | ALA | A:25 | A:51 | 0.0 | 0.0 | H | -61.6 | -24.5 | 0.0 | 0.0 | 0.0 |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-q99538-f1 | 1 | Q99538 | 100.0 | 0.0 | ALA | A:49 | A:49 | 0.0 | 0.0 | H | -60.6 | -43.5 |