Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr14 93185183 . C A CCDS9904.1:NM_001008530.2:c.145Gcg>Tcg_NP_001008530.1:p.49A>S Homo sapiens legumain (LGMN), transcript variant 1, mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4fgu 1 Q99538 99.52 0.0 X-RAY
2013-07-03 ALA A:37 A:49 8.0 0.07 H -65.5 -38.5 8.0 0.07 0.0
ALA B:37 B:49 7.0 0.061 H -73.7 -34.1 NA NA NA
4nok 1 O89017 83.1 0.0 X-RAY
2014-02-19 ALA A:51 A:51 0.0 0.0 H -60.7 -45.0 0.0 0.0 0.0 HOH
6.683
CB
O
4nom 1 O89017 83.1 0.0 X-RAY
2014-02-19 ALA A:51 A:51 0.0 0.0 H -64.2 -37.9 0.0 0.0 0.0 HOH
6.772
CB
O
4nol 1 O89017 82.87 0.0 X-RAY
2014-02-19 ALA A:51 A:51 1.0 0.009 H -63.3 -47.5 1.0 0.009 0.0 HOH
6.657
CB
O
ALA B:51 B:51 0.0 0.0 H -57.1 -47.4 NA NA NA
4d3y 1 G3I1H5 84.8 0.0 X-RAY
2016-01-20 ALA A:24 A:54 1.0 0.009 H -62.0 -49.9 1.0 0.009 0.0 HOH
7.053
CB
O
4d3z 1 G3I1H5 84.8 0.0 X-RAY
2016-01-20 ALA A:24 A:54 0.0 0.0 H -65.6 -48.7 0.0 0.0 0.0 HOH
6.656
CB
O
4aw9 1 Q99538 99.65 0.0 X-RAY
2013-06-26 ALA A:24 A:49 0.0 0.0 H -63.2 -42.3 0.0 0.0 0.0 HOH
6.560
CB
O
4awa 1 Q99538 99.65 0.0 X-RAY
2013-06-26 ALA A:24 A:49 0.0 0.0 H -64.4 -40.4 0.0 0.0 0.0 HOH
6.670
CB
O
4awb 1 Q99538 99.65 0.0 X-RAY
2013-06-26 ALA A:24 A:49 0.0 0.0 H -54.2 -47.6 0.0 0.0 0.0 HOH
9.421
O
O
ALA B:24 B:49 0.0 0.0 H -72.8 -43.5 0.0 0.0 0.0 HOH
6.845
CB
O
4n6n 1 Q99538 99.28 0.0 X-RAY
2015-02-18 ALA A:24 A:49 0.0 0.0 H -62.3 -40.6 0.0 0.0 0.0 HOH
6.806
CB
O
4n6o 1 Q99538 99.28 0.0 X-RAY
2015-02-11 ALA A:24 A:49 0.0 0.0 H -60.2 -41.2 0.0 0.0 0.0 HOH
6.801
CB
O
5lu8 2 Q99538 99.24 0.0 X-RAY
2017-03-29 ALA B:24 A:49 0.0 0.0 H -65.6 -45.2 0.0 0.0 0.0 HOH
6.715
CB
O
5lu9 2 Q99538 99.24 0.0 X-RAY
2017-03-29 ALA B:24 A:49 0.0 0.0 H -65.0 -39.1 0.0 0.0 0.0 HOH
7.065
CB
O
5lua 1 Q99538 99.24 0.0 X-RAY
2017-03-29 ALA A:24 A:49 0.0 0.0 H -61.5 -44.6 0.0 0.0 0.0 HOH
6.760
CB
O
ALA B:24 B:49 0.0 0.0 H -58.4 -42.5 NA NA NA
5lub 1 Q99538 99.24 0.0 X-RAY
2017-03-29 ALA A:24 B:49 0.0 0.0 H -59.7 -43.2 NA NA NA
ALA B:24 A:49 0.0 0.0 H -60.2 -44.5 0.0 0.0 0.0 HOH
6.794
CB
O
7o50 1 Q99538 99.24 0.0 X-RAY
2021-09-22 ALA A:24 A:49 0.0 0.0 H -65.6 -43.1 0.0 0.0 0.0 HOH
6.887
CB
O
ALA B:24 B:49 0.0 0.0 H -64.0 -42.0 NA NA NA
4d3x 1 G3I1H5 89.79 0.0 X-RAY
2016-01-20 ALA A:24 A:54 0.0 0.0 H -62.1 -40.8 0.0 0.0 0.0 HOH
6.912
CB
O
4noj 1 O89017 92.4 0.0 X-RAY
2014-02-19 ALA A:25 A:51 0.0 0.0 H -61.6 -24.5 0.0 0.0 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q99538-f1 1 Q99538 100.0 0.0 ALA A:49 A:49 0.0 0.0 H -60.6 -43.5