Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr14 24737993 . C A CCDS45088.1:NM_004581.5:c.838Gat>Tat_NP_004572.3:p.280D>Y Homo sapiens Rab geranylgeranyltransferase alpha subunit (RABGGTA), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1dce 1 Q08602 91.36 0.0 X-RAY
 2000-03-24 GLU A:280 A:280 98.0 0.516 S 61.4 45.4 98.0 0.516 0.0 HOH
 2.520
 OE1
 O
GLU C:280 C:280 105.0 0.553 T 66.7 26.6 NA NA NA
1ltx 1 Q08602 91.36 0.0 X-RAY
 2003-05-21 GLU A:280 A:280 121.0 0.637 S 58.4 48.8 121.0 0.637 0.0 HOH
 7.225
 N
 O
4ehm 1 Q08602 81.82 1e-160 X-RAY
 2012-05-30 LEU A:284 A:284 12.0 0.071 H -87.9 -60.2 12.0 0.071 0.0 HOH
 2.650
 O
 O
4gts 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 LEU A:284 A:284 14.0 0.082 H -88.7 -54.7 14.0 0.082 0.0 HOH
 6.041
 O
 O
4gtt 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 LEU A:284 A:284 15.0 0.088 H -91.4 -55.4 15.0 0.088 0.0 HOH
 2.495
 O
 O
4gtv 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 LEU A:284 A:284 15.0 0.088 H -90.0 -56.7 15.0 0.088 0.0 HOH
 2.734
 O
 O
3dss 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 LEU A:285 A:284 18.0 0.106 H -88.2 -55.1 18.0 0.106 0.0 HOH
 2.691
 O
 O
3dst 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 LEU A:285 A:284 13.0 0.076 H -87.9 -53.0 13.0 0.076 0.0 HOH
 4.393
 O
 O
3dsu 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 LEU A:285 A:284 11.0 0.065 H -86.9 -51.3 11.0 0.065 0.0 HOH
 2.647
 O
 O
3dsv 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 LEU A:285 A:284 14.0 0.082 H -87.6 -58.4 14.0 0.082 0.0 HOH
 2.609
 O
 O
3dsw 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 LEU A:285 A:284 9.0 0.053 H -83.4 -63.3 9.0 0.053 0.0 HOH
 2.683
 O
 O
3dsx 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 LEU A:285 A:284 9.0 0.053 H -87.3 -56.4 9.0 0.053 0.0 HOH
 4.372
 O
 O
3hxb 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 LEU A:285 A:284 8.0 0.047 H -81.3 -69.2 8.0 0.047 0.0 HOH
 4.738
 O
 O
3hxc 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 LEU A:285 A:284 15.0 0.088 H -88.7 -56.5 15.0 0.088 0.0 HOH
 6.317
 O
 O
3hxd 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 LEU A:285 A:284 16.0 0.094 H -86.5 -55.0 16.0 0.094 0.0 HOH
 2.803
 O
 O
3hxe 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 LEU A:285 A:284 14.0 0.082 H -86.5 -57.2 14.0 0.082 0.0 HOH
 2.779
 O
 O
3hxf 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 LEU A:285 A:284 14.0 0.082 H -86.0 -51.2 14.0 0.082 0.0 HOH
 4.393
 O
 O
3c72 1 Q08602 81.82 1e-160 X-RAY
 2008-07-22 LEU A:288 A:284 12.0 0.071 H -88.2 -60.9 12.0 0.071 0.0 HOH
 5.700
 N
 O
3pz1 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 LEU A:286 A:284 24.0 0.141 H -87.9 -57.9 24.0 0.141 0.0 HOH
 2.652
 O
 O
3pz2 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 LEU A:286 A:284 29.0 0.171 H -94.1 -76.2 29.0 0.171 0.0 HOH
 2.568
 O
 O
3pz3 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 LEU A:286 A:284 15.0 0.088 H -88.6 -52.6 15.0 0.088 0.0 HOH
 2.895
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q92696-f1 1 Q92696 100.0 0.0 ASP A:280 A:280 105.0 0.7 T 57.3 10.7