Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr14 24738022 . C A CCDS45088.1:NM_004581.5:c.809aGg>aTg_NP_004572.3:p.270R>M Homo sapiens Rab geranylgeranyltransferase alpha subunit (RABGGTA), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1dce 1 Q08602 91.36 0.0 X-RAY
 2000-03-24 ARG A:270 A:270 246.0 1.0 T -31.6 -76.7 110.0 0.489 0.511 B:Q08603:0.604
 HOH
 3.230
 O
 O
ARG C:270 C:270 234.0 1.0 S -47.9 -72.4 NA NA NA
1ltx 1 Q08602 91.36 0.0 X-RAY
 2003-05-21 ARG A:270 A:270 219.0 0.973 T -14.7 -75.5 157.0 0.698 0.275 B:Q08603:0.276
 HOH
 7.203
 CD
 O
4ehm 1 Q08602 81.82 1e-160 X-RAY
 2012-05-30 LEU A:274 A:274 0.0 0.0 H -63.1 -48.4 0.0 0.0 0.0 HOH
 5.056
 CD2
 O
4gts 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 LEU A:274 A:274 1.0 0.006 H -60.1 -48.7 1.0 0.006 0.0 HOH
 7.543
 CD1
 O
4gtt 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 LEU A:274 A:274 0.0 0.0 H -63.1 -47.6 0.0 0.0 0.0 HOH
 5.678
 CD1
 O
4gtv 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 LEU A:274 A:274 2.0 0.012 H -64.2 -45.1 2.0 0.012 0.0 HOH
 3.471
 CG
 O
3dss 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 LEU A:275 A:274 4.0 0.024 H -65.3 -45.8 4.0 0.024 0.0 HOH
 3.584
 CD2
 O
3dst 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 LEU A:275 A:274 4.0 0.024 H -64.7 -48.4 4.0 0.024 0.0 HOH
 3.848
 CG
 O
3dsu 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 LEU A:275 A:274 2.0 0.012 H -64.4 -48.1 2.0 0.012 0.0 HOH
 3.516
 CD1
 O
3dsv 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 LEU A:275 A:274 3.0 0.018 H -65.2 -45.5 3.0 0.018 0.0 HOH
 3.410
 CD1
 O
3dsw 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 LEU A:275 A:274 2.0 0.012 H -63.5 -43.7 2.0 0.012 0.0 HOH
 5.220
 CD2
 O
3dsx 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 LEU A:275 A:274 2.0 0.012 H -65.4 -46.3 2.0 0.012 0.0 HOH
 3.630
 CG
 O
3hxb 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 LEU A:275 A:274 2.0 0.012 H -55.5 -48.5 2.0 0.012 0.0 HOH
 3.505
 CG
 O
3hxc 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 LEU A:275 A:274 2.0 0.012 H -65.2 -45.2 2.0 0.012 0.0 HOH
 3.564
 CG
 O
3hxd 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 LEU A:275 A:274 2.0 0.012 H -64.5 -45.3 2.0 0.012 0.0 HOH
 3.572
 CG
 O
3hxe 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 LEU A:275 A:274 2.0 0.012 H -68.9 -44.0 2.0 0.012 0.0 HOH
 3.761
 CG
 O
3hxf 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 LEU A:275 A:274 2.0 0.012 H -63.5 -45.5 2.0 0.012 0.0 HOH
 5.421
 CD1
 O
3c72 1 Q08602 81.82 1e-160 X-RAY
 2008-07-22 LEU A:278 A:274 2.0 0.012 H -62.1 -44.1 2.0 0.012 0.0 HOH
 3.886
 CG
 O
3pz1 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 LEU A:276 A:274 1.0 0.006 H -66.1 -44.5 1.0 0.006 0.0 HOH
 5.580
 CD2
 O
3pz2 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 LEU A:276 A:274 1.0 0.006 H -59.5 -49.5 1.0 0.006 0.0 HOH
 6.847
 CD1
 O
3pz3 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 LEU A:276 A:274 2.0 0.012 H -67.3 -47.0 2.0 0.012 0.0 HOH
 3.705
 CG
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q92696-f1 1 Q92696 100.0 0.0 ARG A:270 A:270 259.0 1.0 T 47.7 -36.8