Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr14 24738029 . C A CCDS45088.1:NM_004581.5:c.802Ggc>Tgc_NP_004572.3:p.268G>C Homo sapiens Rab geranylgeranyltransferase alpha subunit (RABGGTA), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1dce 1 Q08602 91.36 0.0 X-RAY
 2000-03-24 GLY A:268 A:268 51.0 0.68 T 91.3 21.9 51.0 0.68 0.0 HOH
 5.757
 CA
 O
GLY C:268 C:268 50.0 0.667 S 81.1 53.0 NA NA NA
1ltx 1 Q08602 91.36 0.0 X-RAY
 2003-05-21 GLY A:268 A:268 52.0 0.693 S 73.8 63.3 52.0 0.693 0.0 HOH
 6.130
 CA
 O
4ehm 1 Q08602 81.82 1e-160 X-RAY
 2012-05-30 TRP A:272 A:272 50.0 0.196 H -61.8 -45.7 28.0 0.11 0.086 B:Q08603:0.086
 HOH
 3.519
 CD1
 O
4gts 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 TRP A:272 A:272 50.0 0.196 H -65.9 -36.1 28.0 0.11 0.086 B:Q08603:0.086
 HOH
 3.380
 CH2
 O
4gtt 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 TRP A:272 A:272 50.0 0.196 H -67.0 -38.6 30.0 0.118 0.078 B:Q08603:0.078
 HOH
 3.631
 CZ2
 O
4gtv 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 TRP A:272 A:272 48.0 0.188 H -64.6 -39.0 25.0 0.098 0.09 B:Q08603:0.09
 HOH
 3.699
 CZ2
 O
3dss 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 TRP A:273 A:272 46.0 0.18 H -64.2 -39.4 27.0 0.106 0.074 B:Q08603:0.075
 HOH
 2.957
 NE1
 O
3dst 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 TRP A:273 A:272 48.0 0.188 H -64.9 -42.1 26.0 0.102 0.086 B:Q08603:0.086
 HOH
 3.580
 CH2
 O
3dsu 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 TRP A:273 A:272 46.0 0.18 H -64.9 -39.1 26.0 0.102 0.078 B:Q08603:0.078
 HOH
 3.659
 CH2
 O
3dsv 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 TRP A:273 A:272 50.0 0.196 H -62.3 -39.4 29.0 0.114 0.082 B:Q08603:0.082
 HOH
 3.731
 CH2
 O
3dsw 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 TRP A:273 A:272 48.0 0.188 H -66.9 -36.0 28.0 0.11 0.078 B:Q08603:0.078
 HOH
 3.728
 CH2
 O
3dsx 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 TRP A:273 A:272 48.0 0.188 H -70.9 -36.6 27.0 0.106 0.082 B:Q08603:0.082
 HOH
 3.657
 CZ2
 O
3hxb 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 TRP A:273 A:272 53.0 0.208 H -70.5 -34.6 30.0 0.118 0.09 B:Q08603:0.09
 HOH
 3.437
 CZ2
 O
3hxc 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 TRP A:273 A:272 51.0 0.2 H -62.4 -38.1 31.0 0.122 0.078 B:Q08603:0.078
 HOH
 3.698
 CH2
 O
3hxd 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 TRP A:273 A:272 52.0 0.204 H -64.9 -37.1 31.0 0.122 0.082 B:Q08603:0.082
 HOH
 3.701
 CZ2
 O
3hxe 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 TRP A:273 A:272 49.0 0.192 H -66.2 -40.2 29.0 0.114 0.078 B:Q08603:0.078
 HOH
 3.721
 CZ2
 O
3hxf 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 TRP A:273 A:272 45.0 0.176 H -62.8 -38.2 25.0 0.098 0.078 B:Q08603:0.078
 HOH
 3.645
 CZ2
 O
3c72 1 Q08602 81.82 1e-160 X-RAY
 2008-07-22 TRP A:276 A:272 54.0 0.212 H -67.3 -39.4 32.0 0.125 0.087 B:Q08603:0.086
 HOH
 3.521
 CH2
 O
3pz1 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 TRP A:274 A:272 49.0 0.192 H -65.1 -37.2 29.0 0.114 0.078 B:Q08603:0.078
 HOH
 3.781
 CZ2
 O
3pz2 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 TRP A:274 A:272 30.0 0.118 H -63.3 -40.8 9.0 0.035 0.083 B:Q08603:0.082
 HOH
 3.532
 CH2
 O
3pz3 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 TRP A:274 A:272 51.0 0.2 H -66.9 -37.3 30.0 0.118 0.082 B:Q08603:0.082
 HOH
 3.592
 CZ2
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q92696-f1 1 Q92696 100.0 0.0 GLY A:268 A:268 57.0 0.76 T 99.3 13.8