Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr14 24738124 . G A CCDS45088.1:NM_004581.5:c.791cCc>cTc_NP_004572.3:p.264P>L Homo sapiens Rab geranylgeranyltransferase alpha subunit (RABGGTA), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1dce 1 Q08602 91.36 0.0 X-RAY
 2000-03-24 PRO A:264 A:264 69.0 0.476 E -60.2 130.6 25.0 0.172 0.304 B:Q08603:0.303
 HOH
 5.210
 O
 O
PRO C:264 C:264 71.0 0.49 E -61.6 118.8 NA NA NA
1ltx 1 Q08602 91.36 0.0 X-RAY
 2003-05-21 PRO A:264 A:264 61.0 0.421 E -69.5 112.8 26.0 0.179 0.242 B:Q08603:0.241
 HOH
 4.988
 CG
 O
4ehm 1 Q08602 81.82 1e-160 X-RAY
 2012-05-30 PRO A:268 A:268 71.0 0.49 T -77.0 -16.1 71.0 0.49 0.0 HOH
 3.468
 N
 O
4gts 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 PRO A:268 A:268 75.0 0.517 T -74.9 -17.4 75.0 0.517 0.0 HOH
 7.095
 O
 O
4gtt 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 PRO A:268 A:268 75.0 0.517 T -67.5 -28.9 75.0 0.517 0.0 HOH
 3.338
 O
 O
4gtv 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 PRO A:268 A:268 79.0 0.545 T -72.7 -8.8 79.0 0.545 0.0 HOH
 3.619
 C
 O
3dss 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 PRO A:269 A:268 83.0 0.572 T -64.3 -9.8 83.0 0.572 0.0 HOH
 2.330
 O
 O
3dst 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 PRO A:269 A:268 91.0 0.628 T -73.1 -10.5 91.0 0.628 0.0 HOH
 3.380
 N
 O
3dsu 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 PRO A:269 A:268 81.0 0.559 T -66.7 -17.5 81.0 0.559 0.0 HOH
 2.285
 O
 O
3dsv 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 PRO A:269 A:268 96.0 0.662 T -78.9 -7.3 96.0 0.662 0.0 HOH
 2.426
 O
 O
3dsw 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 PRO A:269 A:268 95.0 0.655 T -74.4 -9.4 95.0 0.655 0.0 HOH
 7.565
 C
 O
3dsx 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 PRO A:269 A:268 84.0 0.579 T -75.7 -12.9 84.0 0.579 0.0 HOH
 3.733
 C
 O
3hxb 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 PRO A:269 A:268 92.0 0.634 T -67.7 -21.5 92.0 0.634 0.0 HOH
 3.483
 O
 O
3hxc 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 PRO A:269 A:268 83.0 0.572 T -66.4 -17.2 83.0 0.572 0.0 HOH
 3.100
 N
 O
3hxd 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 PRO A:269 A:268 77.0 0.531 T -72.6 -14.8 77.0 0.531 0.0 HOH
 3.151
 N
 O
3hxe 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 PRO A:269 A:268 93.0 0.641 T -74.9 -9.6 93.0 0.641 0.0 HOH
 3.571
 CA
 O
3hxf 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 PRO A:269 A:268 93.0 0.641 T -74.3 -5.6 93.0 0.641 0.0 HOH
 5.677
 O
 O
3c72 1 Q08602 81.82 1e-160 X-RAY
 2008-07-22 PRO A:272 A:268 89.0 0.614 T -69.1 -22.7 89.0 0.614 0.0 HOH
 3.074
 O
 O
3pz1 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 PRO A:270 A:268 74.0 0.51 T -68.6 -17.4 74.0 0.51 0.0 HOH
 3.532
 N
 O
3pz2 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 PRO A:270 NA:NA DO NA DO DO DO NA NA NA
3pz3 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 PRO A:270 A:268 73.0 0.503 T -70.1 -17.4 73.0 0.503 0.0 HOH
 3.046
 N
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q92696-f1 1 Q92696 100.0 0.0 PRO A:264 A:264 63.0 0.434 E -67.1 120.3