Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr14 24738127 . C A CCDS45088.1:NM_004581.5:c.788cGg>cTg_NP_004572.3:p.263R>L Homo sapiens Rab geranylgeranyltransferase alpha subunit (RABGGTA), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1dce 1 Q08602 91.36 0.0 X-RAY
 2000-03-24 ARG A:263 A:263 69.0 0.307 E -128.2 155.0 55.0 0.244 0.063 B:Q08603:0.062
 HOH
 2.644
 CZ
 O
ARG C:263 C:263 102.0 0.453 E -137.1 159.5 NA NA NA
1ltx 1 Q08602 91.36 0.0 X-RAY
 2003-05-21 ARG A:263 A:263 105.0 0.467 E -133.5 166.2 98.0 0.436 0.031 B:Q08603:0.031
 HOH
 3.869
 NH1
 O
4ehm 1 Q08602 81.82 1e-160 X-RAY
 2012-05-30 GLU A:267 A:267 77.0 0.405 -111.0 83.1 77.0 0.405 0.0 HOH
 3.398
 C
 O
4gts 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 GLU A:267 A:267 81.0 0.426 -120.7 81.3 81.0 0.426 0.0 HOH
 6.990
 O
 O
4gtt 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 GLU A:267 A:267 75.0 0.395 -136.2 75.2 75.0 0.395 0.0 HOH
 6.735
 O
 O
4gtv 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 GLU A:267 A:267 85.0 0.447 -138.2 80.6 85.0 0.447 0.0 HOH
 2.812
 O
 O
3dss 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 GLU A:268 A:267 87.0 0.458 -131.7 80.1 87.0 0.458 0.0 HOH
 2.536
 OE1
 O
3dst 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 GLU A:268 A:267 90.0 0.474 -129.3 80.0 90.0 0.474 0.0 HOH
 2.619
 O
 O
3dsu 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 GLU A:268 A:267 85.0 0.447 -130.2 78.2 85.0 0.447 0.0 HOH
 2.681
 O
 O
3dsv 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 GLU A:268 A:267 86.0 0.453 -125.9 84.2 86.0 0.453 0.0 HOH
 2.612
 O
 O
3dsw 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 GLU A:268 A:267 84.0 0.442 -132.0 78.3 84.0 0.442 0.0 HOH
 7.334
 O
 O
3dsx 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 GLU A:268 A:267 79.0 0.416 -130.8 82.3 79.0 0.416 0.0 HOH
 2.682
 O
 O
3hxb 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 GLU A:268 A:267 73.0 0.384 -124.3 86.3 73.0 0.384 0.0 HOH
 2.563
 O
 O
3hxc 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 GLU A:268 A:267 81.0 0.426 -134.6 82.1 81.0 0.426 0.0 HOH
 2.821
 O
 O
3hxd 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 GLU A:268 A:267 83.0 0.437 -124.2 84.3 83.0 0.437 0.0 HOH
 2.648
 O
 O
3hxe 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 GLU A:268 A:267 80.0 0.421 -138.6 76.1 80.0 0.421 0.0 HOH
 2.619
 O
 O
3hxf 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 GLU A:268 A:267 86.0 0.453 -130.2 73.7 86.0 0.453 0.0 HOH
 8.014
 OE1
 O
3c72 1 Q08602 81.82 1e-160 X-RAY
 2008-07-22 GLU A:271 A:267 75.0 0.395 -120.4 77.6 75.0 0.395 0.0 HOH
 2.439
 O
 O
3pz1 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 GLU A:269 A:267 94.0 0.495 -137.4 75.1 94.0 0.495 0.0 HOH
 2.927
 OE1
 O
3pz2 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 GLU A:269 NA:NA DO NA DO DO DO NA NA NA
3pz3 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 GLU A:269 A:267 79.0 0.416 -127.1 80.9 79.0 0.416 0.0 HOH
 2.593
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q92696-f1 1 Q92696 100.0 0.0 ARG A:263 A:263 96.0 0.427 E -144.8 164.8