Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr14 24738155 . C A CCDS45088.1:NM_004581.5:c.760Gag>Tag_NP_004572.3:p.254E>* Homo sapiens Rab geranylgeranyltransferase alpha subunit (RABGGTA), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1dce 1 Q08602 91.36 0.0 X-RAY
 2000-03-24 GLU A:254 A:254 46.0 0.242 T -78.8 -18.5 46.0 0.242 0.0 HOH
 2.875
 OE1
 O
GLU C:254 C:254 52.0 0.274 T -73.8 -4.9 NA NA NA
1ltx 1 Q08602 91.36 0.0 X-RAY
 2003-05-21 GLU A:254 A:254 49.0 0.258 T -82.7 -12.0 49.0 0.258 0.0 HOH
 2.414
 OE1
 O
4ehm 1 Q08602 81.82 1e-160 X-RAY
 2012-05-30 GLU A:258 A:258 89.0 0.468 H -59.4 -37.8 89.0 0.468 0.0 HOH
 2.672
 O
 O
4gts 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 GLU A:258 A:258 102.0 0.537 H -61.9 -42.5 102.0 0.537 0.0 HOH
 3.725
 CB
 O
4gtt 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 GLU A:258 A:258 103.0 0.542 H -62.4 -34.4 103.0 0.542 0.0 HOH
 2.710
 OE1
 O
4gtv 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 GLU A:258 A:258 103.0 0.542 H -63.7 -37.6 103.0 0.542 0.0 HOH
 2.737
 OE1
 O
3dss 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 GLU A:259 A:258 104.0 0.547 H -65.3 -35.9 104.0 0.547 0.0 HOH
 2.642
 OE1
 O
3dst 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 GLU A:259 A:258 103.0 0.542 H -63.2 -34.9 103.0 0.542 0.0 HOH
 2.690
 OE1
 O
3dsu 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 GLU A:259 A:258 103.0 0.542 H -65.5 -35.3 103.0 0.542 0.0 HOH
 2.627
 O
 O
3dsv 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 GLU A:259 A:258 104.0 0.547 H -66.0 -34.3 104.0 0.547 0.0 HOH
 2.482
 OE1
 O
3dsw 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 GLU A:259 A:258 101.0 0.532 H -70.3 -35.9 101.0 0.532 0.0 HOH
 2.519
 OE1
 O
3dsx 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 GLU A:259 A:258 100.0 0.526 H -69.5 -32.8 100.0 0.526 0.0 HOH
 2.686
 OE2
 O
3hxb 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 GLU A:259 A:258 94.0 0.495 H -65.6 -36.0 94.0 0.495 0.0 HOH
 5.235
 O
 O
3hxc 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 GLU A:259 A:258 102.0 0.537 H -68.1 -36.7 102.0 0.537 0.0 HOH
 2.626
 OE1
 O
3hxd 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 GLU A:259 A:258 100.0 0.526 H -67.8 -34.8 100.0 0.526 0.0 HOH
 3.972
 CB
 O
3hxe 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 GLU A:259 A:258 102.0 0.537 H -65.7 -34.3 102.0 0.537 0.0 HOH
 2.646
 OE1
 O
3hxf 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 GLU A:259 A:258 102.0 0.537 H -63.9 -35.5 102.0 0.537 0.0 HOH
 2.732
 O
 O
3c72 1 Q08602 81.82 1e-160 X-RAY
 2008-07-22 GLU A:262 A:258 103.0 0.542 H -59.6 -37.0 103.0 0.542 0.0 HOH
 2.700
 OE2
 O
3pz1 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 GLU A:260 A:258 100.0 0.526 H -63.2 -37.8 100.0 0.526 0.0 HOH
 2.650
 OE1
 O
3pz2 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 GLU A:260 A:258 108.0 0.568 H -79.3 -48.7 108.0 0.568 0.0
3pz3 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 GLU A:260 A:258 105.0 0.553 H -66.7 -35.1 105.0 0.553 0.0 HOH
 2.576
 OE1
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q92696-f1 1 Q92696 100.0 0.0 GLU A:254 A:254 40.0 0.211 T -86.6 -3.1