Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr14 24738160 . C A CCDS45088.1:NM_004581.5:c.755cGg>cTg_NP_004572.3:p.252R>L Homo sapiens Rab geranylgeranyltransferase alpha subunit (RABGGTA), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1dce 1 Q08602 91.36 0.0 X-RAY
 2000-03-24 ARG A:252 A:252 74.0 0.329 T -55.3 -48.2 74.0 0.329 0.0 HOH
 2.589
 NH2
 O
ARG C:252 C:252 65.0 0.289 T -63.0 -50.6 NA NA NA
1ltx 1 Q08602 91.36 0.0 X-RAY
 2003-05-21 ARG A:252 A:252 52.0 0.231 T -74.7 -53.0 52.0 0.231 0.0 HOH
 4.723
 NH2
 O
4ehm 1 Q08602 81.82 1e-160 X-RAY
 2012-05-30 LYS A:249 A:249 11.0 0.055 H -61.7 -46.2 11.0 0.055 0.0 HOH
 2.603
 NZ
 O
4gts 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 LYS A:249 A:249 15.0 0.075 H -71.6 -42.1 15.0 0.075 0.0 HOH
 2.803
 NZ
 O
4gtt 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 LYS A:249 A:249 13.0 0.065 H -70.1 -43.0 13.0 0.065 0.0 HOH
 2.695
 NZ
 O
4gtv 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 LYS A:249 A:249 30.0 0.15 H -69.8 -42.4 30.0 0.15 0.0 HOH
 2.673
 NZ
 O
3dss 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 LYS A:250 A:249 12.0 0.06 H -68.8 -41.7 12.0 0.06 0.0 HOH
 2.640
 NZ
 O
3dst 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 LYS A:250 A:249 7.0 0.035 H -72.9 -42.6 7.0 0.035 0.0 HOH
 2.654
 NZ
 O
3dsu 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 LYS A:250 A:249 10.0 0.05 H -72.6 -42.0 10.0 0.05 0.0 HOH
 2.561
 NZ
 O
3dsv 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 LYS A:250 A:249 4.0 0.02 H -71.6 -43.1 4.0 0.02 0.0 HOH
 2.755
 NZ
 O
3dsw 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 LYS A:250 A:249 11.0 0.055 H -66.4 -44.5 11.0 0.055 0.0 HOH
 3.078
 NZ
 O
3dsx 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 LYS A:250 A:249 13.0 0.065 H -70.3 -44.4 13.0 0.065 0.0 HOH
 2.764
 NZ
 O
3hxb 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 LYS A:250 A:249 19.0 0.095 H -62.5 -44.3 19.0 0.095 0.0 HOH
 8.995
 NZ
 O
3hxc 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 LYS A:250 A:249 12.0 0.06 H -69.1 -41.8 12.0 0.06 0.0 HOH
 2.757
 NZ
 O
3hxd 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 LYS A:250 A:249 17.0 0.085 H -69.0 -41.8 17.0 0.085 0.0 HOH
 2.761
 NZ
 O
3hxe 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 LYS A:250 A:249 17.0 0.085 H -74.7 -42.6 17.0 0.085 0.0 HOH
 2.596
 NZ
 O
3hxf 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 LYS A:250 A:249 10.0 0.05 H -68.8 -43.4 10.0 0.05 0.0 HOH
 2.749
 NZ
 O
3c72 1 Q08602 81.82 1e-160 X-RAY
 2008-07-22 LYS A:253 A:249 23.0 0.115 H -71.6 -42.6 23.0 0.115 0.0 HOH
 2.741
 NZ
 O
3pz1 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 LYS A:251 A:249 18.0 0.09 H -68.0 -42.9 18.0 0.09 0.0 HOH
 2.810
 NZ
 O
3pz2 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 LYS A:251 A:249 36.0 0.18 H -77.5 -49.4 36.0 0.18 0.0 HOH
 2.943
 CD
 O
3pz3 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 LYS A:251 A:249 12.0 0.06 H -71.6 -43.2 12.0 0.06 0.0 HOH
 2.611
 NZ
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q92696-f1 1 Q92696 100.0 0.0 ARG A:252 A:252 34.0 0.151 T -66.8 -43.3