Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr14 24738169 . T A CCDS45088.1:NM_004581.5:c.746cAt>cTt_NP_004572.3:p.249H>L Homo sapiens Rab geranylgeranyltransferase alpha subunit (RABGGTA), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1dce 1 Q08602 91.36 0.0 X-RAY
 2000-03-24 HIS A:249 A:249 7.0 0.036 E -148.2 136.7 7.0 0.036 0.0 HOH
 3.033
 CD2
 O
HIS C:249 C:249 7.0 0.036 E -138.0 145.6 NA NA NA
1ltx 1 Q08602 91.36 0.0 X-RAY
 2003-05-21 HIS A:249 A:249 4.0 0.021 E -118.6 145.1 4.0 0.021 0.0 HOH
 7.164
 CD2
 O
4ehm 1 Q08602 81.82 1e-160 X-RAY
 2012-05-30 SER A:246 A:246 39.0 0.339 -62.0 162.5 39.0 0.339 0.0 HOH
 2.942
 N
 O
4gts 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 SER A:246 A:246 34.0 0.296 -63.3 160.4 34.0 0.296 0.0 HOH
 2.754
 N
 O
4gtt 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 SER A:246 A:246 33.0 0.287 -63.7 162.1 33.0 0.287 0.0 HOH
 2.842
 N
 O
4gtv 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 SER A:246 A:246 39.0 0.339 -64.0 166.3 39.0 0.339 0.0 HOH
 2.766
 N
 O
3dss 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 SER A:247 A:246 39.0 0.339 -67.8 163.1 39.0 0.339 0.0 HOH
 2.848
 N
 O
3dst 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 SER A:247 A:246 35.0 0.304 -71.2 162.6 35.0 0.304 0.0 HOH
 3.593
 CB
 O
3dsu 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 SER A:247 A:246 36.0 0.313 -60.7 161.2 36.0 0.313 0.0 HOH
 2.765
 N
 O
3dsv 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 SER A:247 A:246 39.0 0.339 -63.8 164.8 39.0 0.339 0.0 HOH
 2.780
 N
 O
3dsw 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 SER A:247 A:246 38.0 0.33 -63.4 166.6 38.0 0.33 0.0 HOH
 2.710
 N
 O
3dsx 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 SER A:247 A:246 35.0 0.304 -64.1 165.2 35.0 0.304 0.0 HOH
 2.657
 N
 O
3hxb 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 SER A:247 A:246 38.0 0.33 -59.3 164.3 38.0 0.33 0.0 HOH
 7.385
 N
 O
3hxc 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 SER A:247 A:246 37.0 0.322 -64.9 162.1 37.0 0.322 0.0 HOH
 2.838
 N
 O
3hxd 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 SER A:247 A:246 37.0 0.322 -65.3 164.1 37.0 0.322 0.0 HOH
 2.789
 N
 O
3hxe 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 SER A:247 A:246 36.0 0.313 -59.0 161.4 36.0 0.313 0.0 HOH
 2.739
 N
 O
3hxf 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 SER A:247 A:246 40.0 0.348 -65.4 164.6 40.0 0.348 0.0 HOH
 2.748
 N
 O
3c72 1 Q08602 81.82 1e-160 X-RAY
 2008-07-22 SER A:250 A:246 36.0 0.313 -63.8 158.4 36.0 0.313 0.0 HOH
 2.649
 N
 O
3pz1 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 SER A:248 A:246 37.0 0.322 -62.4 164.3 37.0 0.322 0.0 HOH
 2.754
 N
 O
3pz2 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 SER A:248 A:246 24.0 0.209 -155.4 152.3 24.0 0.209 0.0 HOH
 3.328
 N
 O
3pz3 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 SER A:248 A:246 36.0 0.313 -69.2 165.0 36.0 0.313 0.0 HOH
 2.875
 N
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q92696-f1 1 Q92696 100.0 0.0 HIS A:249 A:249 2.0 0.01 E -138.5 123.6