Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr14 24738178 . C A CCDS45088.1:NM_004581.5:c.737cGc>cTc_NP_004572.3:p.246R>L Homo sapiens Rab geranylgeranyltransferase alpha subunit (RABGGTA), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1dce 1 Q08602 91.36 0.0 X-RAY
 2000-03-24 CYS A:246 A:246 1.0 0.007 E -106.6 -16.6 1.0 0.007 0.0 HOH
 4.190
 O
 O
CYS C:246 C:246 4.0 0.03 E -95.0 -23.3 NA NA NA
1ltx 1 Q08602 91.36 0.0 X-RAY
 2003-05-21 CYS A:246 A:246 10.0 0.074 E -97.7 -1.2 10.0 0.074 0.0 HOH
 3.109
 SG
 O
4ehm 1 Q08602 81.82 1e-160 X-RAY
 2012-05-30 ARG A:242 A:242 40.0 NA G -73.2 -33.2 40.0 NA NA HOH
 3.087
 CB
 O
4gts 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 ARG A:242 A:242 103.0 0.458 G -68.4 -22.6 103.0 0.458 0.0 HOH
 4.363
 NH2
 O
4gtt 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 ARG A:242 A:242 45.0 NA G -66.1 -30.4 45.0 NA NA HOH
 2.817
 CB
 O
4gtv 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 ARG A:242 A:242 42.0 NA -73.2 -50.6 42.0 NA NA HOH
 2.985
 CB
 O
3dss 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 ARG A:243 A:242 93.0 0.413 G -62.5 -41.1 93.0 0.413 0.0 HOH
 3.303
 N
 O
3dst 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 ARG A:243 A:242 76.0 0.338 S -121.4 159.6 76.0 0.338 0.0 HOH
 3.948
 NE
 O
3dsu 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 ARG A:243 A:242 34.0 NA S 63.7 85.3 34.0 NA NA HOH
 3.110
 CB
 O
3dsv 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 ARG A:243 A:242 60.0 NA -81.4 -134.0 60.0 NA NA HOH
 4.264
 C
 O
3dsw 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 ARG A:243 A:242 106.0 0.471 T -117.6 137.2 106.0 0.471 0.0 HOH
 3.739
 NH2
 O
3dsx 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 ARG A:243 A:242 102.0 0.453 T -73.3 131.8 102.0 0.453 0.0 HOH
 3.289
 NH1
 O
3hxb 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 ARG A:243 A:242 201.0 0.893 360.0 -55.4 201.0 0.893 0.0 HOH
 4.622
 O
 O
3hxc 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 ARG A:243 A:242 51.0 NA G -68.1 -34.6 51.0 NA NA HOH
 4.101
 C
 O
3hxd 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 ARG A:243 A:242 42.0 NA G -71.7 -31.5 42.0 NA NA HOH
 3.736
 CB
 O
3hxe 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 ARG A:243 A:242 51.0 NA G -67.7 -28.4 51.0 NA NA HOH
 3.751
 O
 O
3hxf 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 ARG A:243 A:242 33.0 NA G -77.9 -39.4 33.0 NA NA HOH
 6.339
 N
 O
3c72 1 Q08602 81.82 1e-160 X-RAY
 2008-07-22 ARG A:246 A:242 224.0 0.996 360.0 -40.7 224.0 0.996 0.0 HOH
 4.784
 O
 O
3pz1 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 ARG A:244 NA:NA DO NA DO DO DO NA NA NA
3pz2 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 ARG A:244 NA:NA DO NA DO DO DO NA NA NA
3pz3 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 ARG A:244 A:242 95.0 0.422 G -63.8 -26.9 95.0 0.422 0.0 HOH
 3.968
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q92696-f1 1 Q92696 100.0 0.0 ARG A:246 A:246 17.0 0.076 E -95.1 -40.4