Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr14 24738303 . C A CCDS45088.1:NM_004581.5:c.698cGt>cTt_NP_004572.3:p.233R>L Homo sapiens Rab geranylgeranyltransferase alpha subunit (RABGGTA), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1dce 1 Q08602 91.36 0.0 X-RAY
 2000-03-24 ARG A:233 A:233 86.0 0.382 H -60.8 -40.0 43.0 0.191 0.191 B:Q08603:0.191
 HOH
 2.707
 NH2
 O
ARG C:233 C:233 90.0 0.4 H -59.7 -47.4 NA NA NA
1ltx 1 Q08602 91.36 0.0 X-RAY
 2003-05-21 ARG A:233 A:233 93.0 0.413 H -62.6 -51.6 55.0 0.244 0.169 B:Q08603:0.169
 HOH
 2.782
 CD
 O
4ehm 1 Q08602 81.82 1e-160 X-RAY
 2012-05-30 ARG A:233 A:233 89.0 0.396 H -60.3 -38.7 43.0 0.191 0.205 B:Q08603:0.204
 HOH
 2.271
 O
 O
4gts 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 ARG A:233 A:233 89.0 0.396 H -60.2 -37.0 40.0 0.178 0.218 B:Q08603:0.218
 HOH
 2.752
 NH2
 O
4gtt 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 ARG A:233 A:233 89.0 0.396 H -59.3 -38.3 43.0 0.191 0.205 B:Q08603:0.204
 HOH
 2.927
 NE
 O
4gtv 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 ARG A:233 A:233 92.0 0.409 H -59.1 -39.2 46.0 0.204 0.205 B:Q08603:0.204
 HOH
 2.522
 O
 O
3dss 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 ARG A:234 A:233 89.0 0.396 H -60.8 -40.3 45.0 0.2 0.196 B:Q08603:0.196
 HOH
 2.786
 O
 O
3dst 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 ARG A:234 A:233 92.0 0.409 H -55.9 -41.7 43.0 0.191 0.218 B:Q08603:0.218
 HOH
 2.871
 NE
 O
3dsu 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 ARG A:234 A:233 90.0 0.4 H -58.7 -40.5 45.0 0.2 0.2 B:Q08603:0.2
 HOH
 2.819
 NH2
 O
3dsv 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 ARG A:234 A:233 93.0 0.413 H -57.0 -42.3 43.0 0.191 0.222 B:Q08603:0.222
 HOH
 2.864
 NE
 O
3dsw 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 ARG A:234 A:233 94.0 0.418 H -57.1 -40.8 48.0 0.213 0.205 B:Q08603:0.204
 HOH
 2.825
 NH2
 O
3dsx 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 ARG A:234 A:233 94.0 0.418 H -54.7 -39.4 45.0 0.2 0.218 B:Q08603:0.218
 HOH
 2.768
 O
 O
3hxb 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 ARG A:234 A:233 88.0 0.391 H -57.4 -44.3 41.0 0.182 0.209 B:Q08603:0.209
 HOH
 3.175
 NH2
 O
3hxc 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 ARG A:234 A:233 91.0 0.404 H -57.2 -39.2 45.0 0.2 0.204 B:Q08603:0.204
 HOH
 2.821
 NH2
 O
3hxd 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 ARG A:234 A:233 89.0 0.396 H -57.8 -39.1 44.0 0.196 0.2 B:Q08603:0.2
 HOH
 2.646
 O
 O
3hxe 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 ARG A:234 A:233 93.0 0.413 H -56.2 -38.9 44.0 0.196 0.217 B:Q08603:0.218
 HOH
 2.735
 NE
 O
3hxf 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 ARG A:234 A:233 91.0 0.404 H -57.7 -39.6 43.0 0.191 0.213 B:Q08603:0.213
 HOH
 2.731
 NH2
 O
3c72 1 Q08602 81.82 1e-160 X-RAY
 2008-07-22 ARG A:237 A:233 88.0 0.391 H -59.7 -39.4 44.0 0.196 0.195 B:Q08603:0.196
 HOH
 3.006
 NE
 O
3pz1 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 ARG A:235 A:233 91.0 0.404 H -59.3 -43.0 42.0 0.187 0.217 B:Q08603:0.218
 HOH
 2.735
 NE
 O
3pz2 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 ARG A:235 A:233 91.0 0.404 H -67.4 -34.1 36.0 0.16 0.244 B:Q08603:0.244
 HOH
 3.258
 NH2
 O
3pz3 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 ARG A:235 A:233 87.0 0.387 H -60.6 -38.8 41.0 0.182 0.205 B:Q08603:0.204
 HOH
 2.594
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q92696-f1 1 Q92696 100.0 0.0 ARG A:233 A:233 88.0 0.391 H -58.1 -34.4