Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr14 24738323 . C A CCDS45088.1:NM_004581.5:c.678caG>caT_NP_004572.3:p.226Q>H Homo sapiens Rab geranylgeranyltransferase alpha subunit (RABGGTA), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1dce 1 Q08602 91.36 0.0 X-RAY
 2000-03-24 GLN A:226 A:226 95.0 0.528 S -119.9 -28.7 23.0 0.128 0.4 B:Q08603:0.4
 HOH
 2.904
 OE1
 O
GLN C:226 C:226 101.0 0.561 H -69.9 -35.3 NA NA NA
1ltx 1 Q08602 91.36 0.0 X-RAY
 2003-05-21 GLN A:226 A:226 105.0 0.583 H -45.6 -47.8 16.0 0.089 0.494 B:Q08603:0.494
 HOH
 9.888
 N
 O
4ehm 1 Q08602 81.82 1e-160 X-RAY
 2012-05-30 GLN A:226 A:226 103.0 0.572 H -67.8 -29.1 19.0 0.106 0.466 B:Q08603:0.467
 HOH
 2.079
 NE2
 O
4gts 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 GLN A:226 A:226 96.0 0.533 H -58.3 -28.2 16.0 0.089 0.444 B:Q08603:0.444
 HOH
 2.140
 NE2
 O
4gtt 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 GLN A:226 A:226 96.0 0.533 H -62.3 -24.0 16.0 0.089 0.444 B:Q08603:0.444
 HOH
 2.647
 OE1
 O
4gtv 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 GLN A:226 A:226 99.0 0.55 H -64.8 -23.9 20.0 0.111 0.439 B:Q08603:0.439
 HOH
 2.337
 NE2
 O
3dss 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 GLN A:227 A:226 97.0 0.539 H -73.5 -22.4 16.0 0.089 0.45 B:Q08603:0.45
 HOH
 2.681
 OE1
 O
3dst 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 GLN A:227 A:226 103.0 0.572 H -66.5 -23.8 20.0 0.111 0.461 B:Q08603:0.461
 HOH
 2.782
 NE2
 O
3dsu 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 GLN A:227 A:226 103.0 0.572 H -63.0 -25.5 17.0 0.094 0.478 B:Q08603:0.478
 HOH
 4.036
 OE1
 O
3dsv 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 GLN A:227 A:226 101.0 0.561 H -60.4 -25.4 17.0 0.094 0.467 B:Q08603:0.467
 HOH
 3.022
 OE1
 O
3dsw 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 GLN A:227 A:226 104.0 0.578 H -66.3 -22.0 22.0 0.122 0.456 B:Q08603:0.456
 HOH
 3.117
 NE2
 O
3dsx 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 GLN A:227 A:226 104.0 0.578 H -67.7 -25.6 24.0 0.133 0.445 B:Q08603:0.444
 HOH
 2.942
 NE2
 O
3hxb 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 GLN A:227 A:226 100.0 0.556 H -69.3 -29.5 21.0 0.117 0.439 B:Q08603:0.439
 HOH
 3.460
 OE1
 O
3hxc 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 GLN A:227 A:226 102.0 0.567 H -60.9 -26.5 18.0 0.1 0.467 B:Q08603:0.467
 HOH
 3.088
 OE1
 O
3hxd 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 GLN A:227 A:226 98.0 0.544 H -63.5 -25.1 18.0 0.1 0.444 B:Q08603:0.444
 HOH
 2.783
 OE1
 O
3hxe 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 GLN A:227 A:226 108.0 0.6 H -49.6 -38.9 19.0 0.106 0.494 B:Q08603:0.494
 HOH
 2.349
 OE1
 O
3hxf 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 GLN A:227 A:226 102.0 0.567 H -62.0 -24.9 21.0 0.117 0.45 B:Q08603:0.45
 HOH
 2.698
 NE2
 O
3c72 1 Q08602 81.82 1e-160 X-RAY
 2008-07-22 GLN A:230 A:226 98.0 0.544 H -73.2 -20.5 22.0 0.122 0.422 B:Q08603:0.422
 HOH
 4.255
 NE2
 O
3pz1 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 GLN A:228 A:226 99.0 0.55 H -66.9 -28.4 17.0 0.094 0.456 B:Q08603:0.456
 HOH
 1.866
 NE2
 O
3pz2 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 GLN A:228 A:226 95.0 0.528 H -81.8 -20.8 22.0 0.122 0.406 B:Q08603:0.406
 HOH
 2.355
 NE2
 O
3pz3 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 GLN A:228 A:226 98.0 0.544 H -66.7 -24.9 17.0 0.094 0.45 B:Q08603:0.45
 HOH
 3.547
 OE1
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q92696-f1 1 Q92696 100.0 0.0 GLN A:226 A:226 88.0 0.489 H -59.2 -25.1