Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr14 24738328 . C A CCDS45088.1:NM_004581.5:c.673Gac>Tac_NP_004572.3:p.225D>Y Homo sapiens Rab geranylgeranyltransferase alpha subunit (RABGGTA), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1dce 1 Q08602 91.36 0.0 X-RAY
 2000-03-24 ASP A:225 A:225 23.0 0.153 -142.5 145.1 8.0 0.053 0.1 B:Q08603:0.1
 HOH
 2.314
 OD1
 O
ASP C:225 C:225 18.0 0.12 -60.1 97.6 NA NA NA
1ltx 1 Q08602 91.36 0.0 X-RAY
 2003-05-21 ASP A:225 A:225 6.0 0.04 -111.5 100.9 2.0 0.013 0.027 B:Q08603:0.027
 HOH
 6.206
 OD2
 O
4ehm 1 Q08602 81.82 1e-160 X-RAY
 2012-05-30 ASP A:225 A:225 19.0 0.127 -71.9 97.8 9.0 0.06 0.067 B:Q08603:0.067
 HOH
 3.714
 CB
 O
4gts 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 ASP A:225 A:225 33.0 0.22 -94.5 105.3 12.0 0.08 0.14 B:Q08603:0.14
 HOH
 2.710
 O
 O
4gtt 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 ASP A:225 A:225 41.0 0.273 -86.4 114.0 17.0 0.113 0.16 B:Q08603:0.16
 HOH
 2.502
 O
 O
4gtv 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 ASP A:225 A:225 29.0 0.193 -84.5 108.0 11.0 0.073 0.12 B:Q08603:0.12
 HOH
 2.630
 CG
 O
3dss 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 ASP A:226 A:225 48.0 0.32 -81.5 129.4 22.0 0.147 0.173 B:Q08603:0.173
 HOH
 2.536
 OD1
 O
3dst 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 ASP A:226 A:225 16.0 0.107 -112.2 84.0 7.0 0.047 0.06 B:Q08603:0.06
 HOH
 2.613
 OD2
 O
3dsu 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 ASP A:226 A:225 22.0 0.147 -112.2 101.2 9.0 0.06 0.087 B:Q08603:0.087
 HOH
 2.576
 OD2
 O
3dsv 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 ASP A:226 A:225 23.0 0.153 -108.5 96.1 10.0 0.067 0.086 B:Q08603:0.087
 HOH
 2.452
 O
 O
3dsw 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 ASP A:226 A:225 18.0 0.12 -115.9 91.1 9.0 0.06 0.06 B:Q08603:0.06
 HOH
 2.509
 OD1
 O
3dsx 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 ASP A:226 A:225 17.0 0.113 -74.3 98.1 4.0 0.027 0.086 B:Q08603:0.087
 HOH
 2.519
 OD1
 O
3hxb 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 ASP A:226 A:225 20.0 NA -86.2 99.4 16.0 NA NA B:Q08603:NA
 HOH
 8.400
 N
 O
3hxc 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 ASP A:226 A:225 23.0 0.153 -69.9 103.5 7.0 0.047 0.106 B:Q08603:0.107
 HOH
 2.391
 O
 O
3hxd 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 ASP A:226 A:225 21.0 0.14 -78.0 101.2 7.0 0.047 0.093 B:Q08603:0.093
 HOH
 2.558
 OD2
 O
3hxe 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 ASP A:226 A:225 19.0 0.127 -74.0 100.2 4.0 0.027 0.1 B:Q08603:0.1
 HOH
 2.654
 OD1
 O
3hxf 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 ASP A:226 A:225 17.0 0.113 -80.6 91.7 8.0 0.053 0.06 B:Q08603:0.06
 HOH
 2.367
 OD1
 O
3c72 1 Q08602 81.82 1e-160 X-RAY
 2008-07-22 ASP A:229 A:225 20.0 0.133 -79.7 111.7 15.0 0.1 0.033 B:Q08603:0.033
 HOH
 8.591
 N
 O
3pz1 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 ASP A:227 A:225 13.0 0.087 -76.9 97.9 5.0 0.033 0.054 B:Q08603:0.053
 HOH
 2.680
 OD2
 O
3pz2 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 ASP A:227 A:225 51.0 0.34 -81.2 120.7 30.0 0.2 0.14 B:Q08603:0.14
 HOH
 2.636
 CB
 O
3pz3 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 ASP A:227 A:225 22.0 0.147 -72.0 107.8 5.0 0.033 0.114 B:Q08603:0.113
 HOH
 2.501
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q92696-f1 1 Q92696 100.0 0.0 ASP A:225 A:225 7.0 0.047 -70.0 98.8