Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr14 24738826 . C A CCDS45088.1:NM_004581.5:c.502Gac>Tac_NP_004572.3:p.168D>Y Homo sapiens Rab geranylgeranyltransferase alpha subunit (RABGGTA), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1dce 1 Q08602 91.36 0.0 X-RAY
 2000-03-24 ASP A:168 A:168 64.0 0.427 H -37.2 -65.3 64.0 0.427 0.0 HOH
 5.213
 C
 O
ASP C:168 C:168 55.0 0.367 H -56.7 -71.3 NA NA NA
1ltx 1 Q08602 91.36 0.0 X-RAY
 2003-05-21 ASP A:168 A:168 63.0 0.42 H -60.0 -30.0 59.0 0.393 0.027 C:P37727:0.027
 HOH
 2.403
 OD1
 O
4ehm 1 Q08602 81.82 1e-160 X-RAY
 2012-05-30 ASP A:168 A:168 62.0 0.413 H -63.6 -44.9 62.0 0.413 0.0 HOH
 7.769
 O
 O
4gts 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 ASP A:168 A:168 63.0 0.42 H -65.6 -54.1 63.0 0.42 0.0 HOH
 2.876
 CB
 O
4gtt 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 ASP A:168 A:168 66.0 0.44 H -58.0 -48.9 66.0 0.44 0.0 HOH
 4.911
 CA
 O
4gtv 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 ASP A:168 A:168 66.0 0.44 H -64.7 -42.5 66.0 0.44 0.0 HOH
 2.903
 CB
 O
3dss 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 ASP A:169 A:168 61.0 0.407 H -62.9 -46.0 61.0 0.407 0.0 HOH
 2.665
 OD2
 O
3dst 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 ASP A:169 A:168 61.0 0.407 H -54.3 -54.9 61.0 0.407 0.0 HOH
 3.785
 O
 O
3dsu 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 ASP A:169 A:168 65.0 0.433 H -60.2 -52.6 65.0 0.433 0.0 HOH
 6.804
 O
 O
3dsv 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 ASP A:169 A:168 63.0 0.42 H -60.7 -49.9 63.0 0.42 0.0 HOH
 2.585
 OD2
 O
3dsw 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 ASP A:169 A:168 65.0 0.433 H -61.9 -46.3 65.0 0.433 0.0 HOH
 6.739
 O
 O
3dsx 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 ASP A:169 A:168 69.0 0.46 H -59.3 -53.6 69.0 0.46 0.0 HOH
 3.922
 CB
 O
3hxb 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 ASP A:169 A:168 74.0 0.493 H -47.7 -55.8 74.0 0.493 0.0 HOH
 6.037
 O
 O
3hxc 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 ASP A:169 A:168 60.0 0.4 H -60.4 -45.8 60.0 0.4 0.0 HOH
 4.303
 CB
 O
3hxd 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 ASP A:169 A:168 63.0 0.42 H -58.5 -52.3 63.0 0.42 0.0 HOH
 4.218
 CB
 O
3hxe 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 ASP A:169 A:168 63.0 0.42 H -57.8 -47.3 63.0 0.42 0.0 HOH
 6.813
 O
 O
3hxf 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 ASP A:169 A:168 63.0 0.42 H -52.8 -51.9 63.0 0.42 0.0 HOH
 2.352
 OD1
 O
3c72 1 Q08602 81.82 1e-160 X-RAY
 2008-07-22 ASP A:172 A:168 64.0 0.427 H -49.4 -57.0 64.0 0.427 0.0 HOH
 3.670
 CB
 O
3pz1 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 ASP A:170 A:168 65.0 0.433 H -57.4 -54.3 65.0 0.433 0.0 HOH
 7.233
 O
 O
3pz2 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 ASP A:170 A:168 65.0 0.433 H -65.4 -19.2 65.0 0.433 0.0 HOH
 5.984
 O
 O
3pz3 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 ASP A:170 A:168 65.0 0.433 H -55.8 -52.0 65.0 0.433 0.0 HOH
 3.265
 CB
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q92696-f1 1 Q92696 100.0 0.0 ASP A:168 A:168 59.0 0.393 H -58.1 -44.5