Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr14 24738856 . C A CCDS45088.1:NM_004581.5:c.472Gtg>Ttg_NP_004572.3:p.158V>L Homo sapiens Rab geranylgeranyltransferase alpha subunit (RABGGTA), transcript variant 1, mRNA.
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1dce 1 Q08602 91.36 0.0 X-RAY
 2000-03-24 VAL A:158 A:158 42.0 0.271 29.2 107.0 42.0 0.271 0.0 HOH
 4.806
 N
 O
VAL C:158 C:158 25.0 0.161 -67.0 109.8 NA NA NA
1ltx 1 Q08602 91.36 0.0 X-RAY
 2003-05-21 VAL A:158 A:158 22.0 0.142 -51.9 131.0 22.0 0.142 0.0 HOH
 4.786
 CG1
 O
4ehm 1 Q08602 81.82 1e-160 X-RAY
 2012-05-30 VAL A:158 A:158 35.0 0.226 -78.9 137.7 35.0 0.226 0.0 HOH
 2.466
 O
 O
4gts 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 VAL A:158 A:158 39.0 0.252 -74.2 146.7 39.0 0.252 0.0 HOH
 5.664
 O
 O
4gtt 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 VAL A:158 A:158 44.0 0.284 -73.8 135.1 44.0 0.284 0.0 HOH
 3.223
 O
 O
4gtv 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 VAL A:158 A:158 38.0 0.245 -77.1 129.1 38.0 0.245 0.0 HOH
 2.443
 O
 O
3dss 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 VAL A:159 A:158 37.0 0.239 -72.7 131.7 37.0 0.239 0.0 HOH
 2.720
 O
 O
3dst 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 VAL A:159 A:158 40.0 0.258 -68.8 131.2 40.0 0.258 0.0 HOH
 2.898
 O
 O
3dsu 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 VAL A:159 A:158 41.0 0.265 -69.0 130.6 41.0 0.265 0.0 HOH
 3.003
 O
 O
3dsv 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 VAL A:159 A:158 41.0 0.265 -75.0 133.8 41.0 0.265 0.0 HOH
 3.029
 O
 O
3dsw 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 VAL A:159 A:158 40.0 0.258 -74.4 135.8 40.0 0.258 0.0 HOH
 3.058
 O
 O
3dsx 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 VAL A:159 A:158 41.0 0.265 -73.1 136.5 41.0 0.265 0.0 HOH
 3.083
 O
 O
3hxb 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 VAL A:159 A:158 44.0 0.284 -79.3 143.6 44.0 0.284 0.0 HOH
 3.188
 O
 O
3hxc 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 VAL A:159 A:158 40.0 0.258 -75.0 134.0 40.0 0.258 0.0 HOH
 3.013
 O
 O
3hxd 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 VAL A:159 A:158 39.0 0.252 -76.5 131.8 39.0 0.252 0.0 HOH
 2.952
 O
 O
3hxe 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 VAL A:159 A:158 37.0 0.239 -78.4 130.9 37.0 0.239 0.0 HOH
 2.912
 O
 O
3hxf 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 VAL A:159 A:158 37.0 0.239 -76.2 134.5 37.0 0.239 0.0 HOH
 2.419
 O
 O
3c72 1 Q08602 81.82 1e-160 X-RAY
 2008-07-22 VAL A:162 A:158 46.0 0.297 -86.1 134.6 46.0 0.297 0.0 HOH
 3.000
 O
 O
3pz1 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 VAL A:160 A:158 31.0 0.2 -74.2 139.2 31.0 0.2 0.0 HOH
 2.582
 O
 O
3pz2 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 VAL A:160 A:158 27.0 0.174 -66.6 137.0 27.0 0.174 0.0 HOH
 8.520
 CG2
 O
3pz3 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 VAL A:160 A:158 42.0 0.271 -78.3 139.9 42.0 0.271 0.0 HOH
 2.562
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q92696-f1 1 Q92696 100.0 0.0 VAL A:158 A:158 23.0 0.148 -63.8 124.1