Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr14 24738882 . C A CCDS45088.1:NM_004581.5:c.446cGg>cTg_NP_004572.3:p.149R>L Homo sapiens Rab geranylgeranyltransferase alpha subunit (RABGGTA), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1dce 1 Q08602 91.36 0.0 X-RAY
 2000-03-24 ARG A:149 A:149 40.0 0.178 H -60.6 -38.0 40.0 0.178 0.0 HOH
 2.872
 NH1
 O
ARG C:149 C:149 14.0 0.062 H -69.4 -41.4 NA NA NA
1ltx 1 Q08602 91.36 0.0 X-RAY
 2003-05-21 ARG A:149 A:149 6.0 0.027 H -62.2 -42.9 6.0 0.027 0.0 HOH
 3.393
 NH2
 O
4ehm 1 Q08602 81.82 1e-160 X-RAY
 2012-05-30 ARG A:149 A:149 16.0 0.071 H -58.1 -41.6 16.0 0.071 0.0 HOH
 3.017
 NH1
 O
4gts 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 ARG A:149 A:149 12.0 0.053 H -58.7 -44.9 12.0 0.053 0.0 HOH
 3.095
 NH1
 O
4gtt 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 ARG A:149 A:149 15.0 0.067 H -63.5 -38.5 15.0 0.067 0.0 HOH
 5.010
 O
 O
4gtv 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 ARG A:149 A:149 17.0 0.076 H -61.5 -39.8 17.0 0.076 0.0 HOH
 3.451
 NH1
 O
3dss 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 ARG A:150 A:149 16.0 0.071 H -59.5 -43.4 16.0 0.071 0.0 HOH
 3.198
 NH1
 O
3dst 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 ARG A:150 A:149 13.0 0.058 H -59.5 -42.8 13.0 0.058 0.0 HOH
 3.672
 NH2
 O
3dsu 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 ARG A:150 A:149 15.0 0.067 H -58.9 -42.0 15.0 0.067 0.0 HOH
 3.203
 NH1
 O
3dsv 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 ARG A:150 A:149 15.0 0.067 H -60.5 -45.8 15.0 0.067 0.0 HOH
 3.194
 NH1
 O
3dsw 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 ARG A:150 A:149 14.0 0.062 H -58.0 -46.5 14.0 0.062 0.0 HOH
 3.341
 NH2
 O
3dsx 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 ARG A:150 A:149 15.0 0.067 H -62.5 -41.6 15.0 0.067 0.0 HOH
 3.289
 NH1
 O
3hxb 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 ARG A:150 A:149 14.0 0.062 H -60.2 -42.0 14.0 0.062 0.0 HOH
 5.767
 O
 O
3hxc 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 ARG A:150 A:149 15.0 0.067 H -62.4 -39.9 15.0 0.067 0.0 HOH
 3.371
 NH2
 O
3hxd 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 ARG A:150 A:149 17.0 0.076 H -61.7 -37.3 17.0 0.076 0.0 HOH
 3.356
 NH2
 O
3hxe 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 ARG A:150 A:149 14.0 0.062 H -62.4 -43.8 14.0 0.062 0.0 HOH
 3.179
 NH1
 O
3hxf 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 ARG A:150 A:149 15.0 0.067 H -59.3 -40.4 15.0 0.067 0.0 HOH
 3.253
 NH1
 O
3c72 1 Q08602 81.82 1e-160 X-RAY
 2008-07-22 ARG A:153 A:149 12.0 0.053 H -64.6 -38.0 12.0 0.053 0.0 HOH
 5.073
 O
 O
3pz1 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 ARG A:151 A:149 15.0 0.067 H -57.1 -46.2 15.0 0.067 0.0 HOH
 3.332
 NH1
 O
3pz2 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 ARG A:151 A:149 15.0 0.067 H -56.7 -38.7 15.0 0.067 0.0 HOH
 6.178
 C
 O
3pz3 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 ARG A:151 A:149 16.0 0.071 H -62.1 -41.6 16.0 0.071 0.0 HOH
 3.203
 NH1
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q92696-f1 1 Q92696 100.0 0.0 ARG A:149 A:149 15.0 0.067 H -60.6 -44.6