Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr14 24739189 . C A CCDS45088.1:NM_004581.5:c.397Gcc>Tcc_NP_004572.3:p.133A>S Homo sapiens Rab geranylgeranyltransferase alpha subunit (RABGGTA), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1dce 1 Q08602 91.36 0.0 X-RAY
 2000-03-24 ALA A:133 A:133 41.0 0.357 H -54.7 -39.1 41.0 0.357 0.0 HOH
 3.212
 O
 O
ALA C:133 C:133 17.0 0.148 H -58.6 -44.9 NA NA NA
1ltx 1 Q08602 91.36 0.0 X-RAY
 2003-05-21 ALA A:133 A:133 22.0 0.191 H -43.7 -24.3 22.0 0.191 0.0 HOH
 8.279
 CB
 O
4ehm 1 Q08602 81.82 1e-160 X-RAY
 2012-05-30 ALA A:133 A:133 26.0 0.226 H -56.0 -43.6 26.0 0.226 0.0 HOH
 2.679
 O
 O
4gts 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 ALA A:133 A:133 23.0 0.2 H -58.8 -37.7 23.0 0.2 0.0 HOH
 3.463
 CB
 O
4gtt 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 ALA A:133 A:133 22.0 0.191 H -57.7 -38.0 22.0 0.191 0.0 HOH
 2.713
 O
 O
4gtv 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 ALA A:133 A:133 24.0 0.209 H -55.5 -41.8 24.0 0.209 0.0 HOH
 2.693
 O
 O
3dss 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 ALA A:134 A:133 20.0 0.174 H -54.8 -43.0 20.0 0.174 0.0 HOH
 2.802
 O
 O
3dst 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 ALA A:134 A:133 25.0 0.217 H -52.5 -44.5 25.0 0.217 0.0 HOH
 9.054
 CB
 O
3dsu 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 ALA A:134 A:133 23.0 0.2 H -55.4 -40.2 23.0 0.2 0.0 HOH
 2.647
 O
 O
3dsv 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 ALA A:134 A:133 24.0 0.209 H -56.0 -39.9 24.0 0.209 0.0 HOH
 2.687
 O
 O
3dsw 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 ALA A:134 A:133 22.0 0.191 H -56.2 -33.8 22.0 0.191 0.0 HOH
 2.707
 O
 O
3dsx 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 ALA A:134 A:133 23.0 0.2 H -59.4 -37.6 23.0 0.2 0.0 HOH
 3.858
 CB
 O
3hxb 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 ALA A:134 A:133 25.0 0.217 H -61.5 -33.7 25.0 0.217 0.0 HOH
 5.890
 O
 O
3hxc 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 ALA A:134 A:133 22.0 0.191 H -52.0 -42.9 22.0 0.191 0.0 HOH
 2.787
 O
 O
3hxd 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 ALA A:134 A:133 22.0 0.191 H -53.8 -41.8 22.0 0.191 0.0 HOH
 2.722
 O
 O
3hxe 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 ALA A:134 A:133 22.0 0.191 H -55.7 -37.7 22.0 0.191 0.0 HOH
 2.849
 O
 O
3hxf 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 ALA A:134 A:133 24.0 0.209 H -55.5 -44.0 24.0 0.209 0.0 HOH
 2.784
 O
 O
3c72 1 Q08602 81.82 1e-160 X-RAY
 2008-07-22 ALA A:137 A:133 22.0 0.191 H -52.2 -34.8 22.0 0.191 0.0 HOH
 8.015
 O
 O
3pz1 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 ALA A:135 A:133 22.0 0.191 H -49.7 -44.4 22.0 0.191 0.0 HOH
 3.710
 CB
 O
3pz2 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 ALA A:135 A:133 27.0 0.235 H -48.3 -56.3 27.0 0.235 0.0
3pz3 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 ALA A:135 A:133 22.0 0.191 H -56.8 -40.3 22.0 0.191 0.0 HOH
 2.655
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q92696-f1 1 Q92696 100.0 0.0 ALA A:133 A:133 40.0 0.348 H -57.6 -45.5