Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr14 24739201 . G A CCDS45088.1:NM_004581.5:c.385Ctg>Ttg_NP_004572.3:p.129L>L Homo sapiens Rab geranylgeranyltransferase alpha subunit (RABGGTA), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1dce 1 Q08602 91.36 0.0 X-RAY
 2000-03-24 LEU A:129 A:129 66.0 0.388 H -70.4 -33.2 66.0 0.388 0.0 HOH
 4.563
 CD1
 O
LEU C:129 C:129 43.0 0.253 H -65.5 -34.4 NA NA NA
1ltx 1 Q08602 91.36 0.0 X-RAY
 2003-05-21 LEU A:129 A:129 34.0 0.2 H -54.9 -9.3 34.0 0.2 0.0 HOH
 4.827
 CD2
 O
4ehm 1 Q08602 81.82 1e-160 X-RAY
 2012-05-30 LEU A:129 A:129 33.0 0.194 H -69.1 -33.1 33.0 0.194 0.0 HOH
 3.373
 O
 O
4gts 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 LEU A:129 A:129 39.0 0.229 H -52.4 -41.0 39.0 0.229 0.0 HOH
 3.335
 O
 O
4gtt 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 LEU A:129 A:129 30.0 0.176 H -63.7 -26.8 30.0 0.176 0.0 HOH
 3.587
 CB
 O
4gtv 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 LEU A:129 A:129 32.0 0.188 H -64.3 -34.0 32.0 0.188 0.0 HOH
 3.566
 O
 O
3dss 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 LEU A:130 A:129 30.0 0.176 H -60.3 -35.0 30.0 0.176 0.0 HOH
 3.505
 O
 O
3dst 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 LEU A:130 A:129 31.0 0.182 H -68.3 -30.4 31.0 0.182 0.0 HOH
 4.577
 CD1
 O
3dsu 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 LEU A:130 A:129 30.0 0.176 H -64.4 -31.5 30.0 0.176 0.0 HOH
 3.492
 O
 O
3dsv 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 LEU A:130 A:129 31.0 0.182 H -62.7 -35.0 31.0 0.182 0.0 HOH
 3.415
 O
 O
3dsw 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 LEU A:130 A:129 31.0 0.182 H -65.9 -32.6 31.0 0.182 0.0 HOH
 3.537
 O
 O
3dsx 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 LEU A:130 A:129 30.0 0.176 H -62.3 -36.1 30.0 0.176 0.0 HOH
 3.558
 O
 O
3hxb 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 LEU A:130 A:129 34.0 0.2 H -71.8 -24.4 34.0 0.2 0.0 HOH
 3.662
 CB
 O
3hxc 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 LEU A:130 A:129 33.0 0.194 H -62.1 -33.3 33.0 0.194 0.0 HOH
 3.449
 O
 O
3hxd 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 LEU A:130 A:129 34.0 0.2 H -62.2 -33.5 34.0 0.2 0.0 HOH
 3.522
 O
 O
3hxe 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 LEU A:130 A:129 34.0 0.2 H -61.3 -37.1 34.0 0.2 0.0 HOH
 3.615
 O
 O
3hxf 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 LEU A:130 A:129 31.0 0.182 H -62.8 -30.4 31.0 0.182 0.0 HOH
 3.431
 O
 O
3c72 1 Q08602 81.82 1e-160 X-RAY
 2008-07-22 LEU A:133 A:129 37.0 0.218 H -61.5 -33.8 37.0 0.218 0.0 HOH
 8.106
 CD2
 O
3pz1 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 LEU A:131 A:129 30.0 0.176 H -63.9 -34.2 30.0 0.176 0.0 HOH
 3.653
 O
 O
3pz2 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 LEU A:131 A:129 32.0 0.188 H -65.5 -36.0 32.0 0.188 0.0 HOH
 8.036
 CD1
 O
3pz3 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 LEU A:131 A:129 31.0 0.182 H -62.7 -32.8 31.0 0.182 0.0 HOH
 3.452
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q92696-f1 1 Q92696 100.0 0.0 LEU A:129 A:129 38.0 0.224 H -65.5 -40.5