Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr14 24739215 . T A CCDS45088.1:NM_004581.5:c.371aAc>aTc_NP_004572.3:p.124N>I Homo sapiens Rab geranylgeranyltransferase alpha subunit (RABGGTA), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1dce 1 Q08602 91.36 0.0 X-RAY
 2000-03-24 ASN A:124 A:124 83.0 0.519 -92.1 99.2 83.0 0.519 0.0 HOH
 2.643
 O
 O
ASN C:124 C:124 76.0 0.475 -86.2 98.6 NA NA NA
1ltx 1 Q08602 91.36 0.0 X-RAY
 2003-05-21 ASN A:124 A:124 37.0 0.231 T -78.5 13.5 37.0 0.231 0.0
4ehm 1 Q08602 81.82 1e-160 X-RAY
 2012-05-30 ASN A:124 A:124 94.0 0.588 -93.4 89.3 94.0 0.588 0.0 HOH
 3.216
 O
 O
4gts 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 ASN A:124 A:124 80.0 0.5 -94.9 84.3 80.0 0.5 0.0 HOH
 3.837
 OD1
 O
4gtt 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 ASN A:124 A:124 79.0 0.494 -95.9 89.6 79.0 0.494 0.0 HOH
 3.552
 OD1
 O
4gtv 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 ASN A:124 A:124 94.0 0.588 -91.8 87.8 94.0 0.588 0.0 HOH
 2.805
 N
 O
3dss 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 ASN A:125 A:124 80.0 0.5 -96.9 91.8 80.0 0.5 0.0 HOH
 2.933
 N
 O
3dst 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 ASN A:125 A:124 83.0 0.519 -90.9 89.4 83.0 0.519 0.0 HOH
 3.576
 ND2
 O
3dsu 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 ASN A:125 A:124 101.0 0.631 -95.0 83.0 101.0 0.631 0.0 HOH
 3.213
 O
 O
3dsv 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 ASN A:125 A:124 83.0 0.519 -83.7 83.3 83.0 0.519 0.0 HOH
 3.008
 N
 O
3dsw 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 ASN A:125 A:124 86.0 0.537 -79.6 88.5 86.0 0.537 0.0 HOH
 3.913
 OD1
 O
3dsx 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 ASN A:125 A:124 82.0 0.512 -90.2 88.8 82.0 0.512 0.0 HOH
 2.812
 N
 O
3hxb 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 ASN A:125 A:124 109.0 0.681 -85.0 80.1 109.0 0.681 0.0 HOH
 3.701
 OD1
 O
3hxc 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 ASN A:125 A:124 93.0 0.581 -90.8 85.3 93.0 0.581 0.0 HOH
 3.078
 N
 O
3hxd 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 ASN A:125 A:124 96.0 0.6 -89.6 85.9 96.0 0.6 0.0 HOH
 2.884
 O
 O
3hxe 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 ASN A:125 A:124 79.0 0.494 -96.9 83.0 79.0 0.494 0.0 HOH
 3.303
 N
 O
3hxf 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 ASN A:125 A:124 94.0 0.588 -91.9 84.4 94.0 0.588 0.0 HOH
 3.122
 O
 O
3c72 1 Q08602 81.82 1e-160 X-RAY
 2008-07-22 ASN A:128 A:124 96.0 0.6 -98.5 94.9 96.0 0.6 0.0 HOH
 3.523
 OD1
 O
3pz1 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 ASN A:126 A:124 93.0 0.581 -100.0 87.5 93.0 0.581 0.0 HOH
 2.897
 N
 O
3pz2 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 ASN A:126 A:124 83.0 0.519 -87.1 90.5 83.0 0.519 0.0 HOH
 3.746
 OD1
 O
3pz3 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 ASN A:126 A:124 78.0 0.487 -94.3 96.6 78.0 0.487 0.0 HOH
 3.575
 ND2
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q92696-f1 1 Q92696 100.0 0.0 ASN A:124 A:124 99.0 0.619 -80.9 85.4