Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr14 24739255 . G A CCDS45088.1:NM_004581.5:c.331Cac>Tac_NP_004572.3:p.111H>Y Homo sapiens Rab geranylgeranyltransferase alpha subunit (RABGGTA), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1dce 1 Q08602 91.36 0.0 X-RAY
 2000-03-24 HIS A:111 A:111 110.0 0.564 H -66.3 -35.7 34.0 0.174 0.39 B:Q08603:0.39
 HOH
 2.976
 ND1
 O
HIS C:111 C:111 106.0 0.544 H -68.0 -40.6 NA NA NA
1ltx 1 Q08602 91.36 0.0 X-RAY
 2003-05-21 HIS A:111 A:111 100.0 0.513 H -66.8 -47.9 27.0 0.138 0.375 B:Q08603:0.374
 HOH
 8.216
 NE2
 O
4ehm 1 Q08602 81.82 1e-160 X-RAY
 2012-05-30 HIS A:111 A:111 104.0 0.533 H -64.9 -43.7 29.0 0.149 0.384 B:Q08603:0.385
 HOH
 2.399
 ND1
 O
4gts 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 HIS A:111 A:111 105.0 0.538 H -61.8 -42.0 27.0 0.138 0.4 B:Q08603:0.4
 HOH
 3.684
 CB
 O
4gtt 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 HIS A:111 A:111 97.0 0.497 H -65.2 -42.6 24.0 0.123 0.374 B:Q08603:0.374
 HOH
 3.527
 ND1
 O
4gtv 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 HIS A:111 A:111 104.0 0.533 H -65.2 -42.5 26.0 0.133 0.4 B:Q08603:0.4
 HOH
 3.651
 ND1
 O
3dss 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 HIS A:112 A:111 101.0 0.518 H -63.6 -41.1 25.0 0.128 0.39 B:Q08603:0.39
 HOH
 3.119
 CD2
 O
3dst 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 HIS A:112 A:111 108.0 0.554 H -66.0 -39.6 27.0 0.138 0.416 B:Q08603:0.415
 HOH
 3.522
 CA
 O
3dsu 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 HIS A:112 A:111 104.0 0.533 H -68.2 -41.8 27.0 0.138 0.395 B:Q08603:0.395
 HOH
 2.938
 CD2
 O
3dsv 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 HIS A:112 A:111 104.0 0.533 H -68.2 -41.4 29.0 0.149 0.384 B:Q08603:0.385
 HOH
 3.169
 CD2
 O
3dsw 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 HIS A:112 A:111 103.0 0.528 H -65.1 -42.7 30.0 0.154 0.374 B:Q08603:0.374
 HOH
 3.425
 ND1
 O
3dsx 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 HIS A:112 A:111 105.0 0.538 H -66.1 -40.2 31.0 0.159 0.379 B:Q08603:0.379
 HOH
 3.535
 CA
 O
3hxb 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 HIS A:112 A:111 109.0 0.559 H -69.1 -42.7 31.0 0.159 0.4 B:Q08603:0.4
 HOH
 3.655
 CB
 O
3hxc 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 HIS A:112 A:111 106.0 0.544 H -67.4 -40.4 30.0 0.154 0.39 B:Q08603:0.39
 HOH
 3.569
 CA
 O
3hxd 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 HIS A:112 A:111 110.0 0.564 H -66.7 -38.9 31.0 0.159 0.405 B:Q08603:0.405
 HOH
 3.155
 CD2
 O
3hxe 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 HIS A:112 A:111 107.0 0.549 H -67.5 -39.5 28.0 0.144 0.405 B:Q08603:0.405
 HOH
 3.494
 NE2
 O
3hxf 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 HIS A:112 A:111 101.0 0.518 H -60.1 -43.8 27.0 0.138 0.38 B:Q08603:0.379
 HOH
 2.962
 CD2
 O
3c72 1 Q08602 81.82 1e-160 X-RAY
 2008-07-22 HIS A:115 A:111 109.0 0.559 H -62.5 -38.6 32.0 0.164 0.395 B:Q08603:0.395
 HOH
 2.823
 ND1
 O
3pz1 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 HIS A:113 A:111 102.0 0.523 H -68.6 -38.8 26.0 0.133 0.39 B:Q08603:0.39
 HOH
 3.069
 CD2
 O
3pz2 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 HIS A:113 A:111 113.0 0.579 H -74.6 -35.0 31.0 0.159 0.42 B:Q08603:0.421
 HOH
 3.166
 ND1
 O
3pz3 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 HIS A:113 A:111 105.0 0.538 H -64.7 -41.7 29.0 0.149 0.389 B:Q08603:0.39
 HOH
 3.725
 N
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q92696-f1 1 Q92696 100.0 0.0 HIS A:111 A:111 113.0 0.579 H -63.0 -42.1