Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr14 24739261 . T A CCDS45088.1:NM_004581.5:c.325Acc>Tcc_NP_004572.3:p.109T>S Homo sapiens Rab geranylgeranyltransferase alpha subunit (RABGGTA), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1dce 1 Q08602 91.36 0.0 X-RAY
 2000-03-24 THR A:109 A:109 0.0 0.0 H -66.7 -43.4 0.0 0.0 0.0 HOH
 4.119
 N
 O
THR C:109 C:109 0.0 0.0 H -68.1 -48.1 NA NA NA
1ltx 1 Q08602 91.36 0.0 X-RAY
 2003-05-21 THR A:109 A:109 0.0 0.0 H -52.2 -71.9 0.0 0.0 0.0
4ehm 1 Q08602 81.82 1e-160 X-RAY
 2012-05-30 THR A:109 A:109 0.0 0.0 H -73.3 -46.4 0.0 0.0 0.0 HOH
 4.710
 OG1
 O
4gts 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 THR A:109 A:109 0.0 0.0 H -75.4 -44.8 0.0 0.0 0.0 HOH
 4.811
 OG1
 O
4gtt 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 THR A:109 A:109 0.0 0.0 H -71.3 -45.1 0.0 0.0 0.0 7TQ
HOH
 9.957
2.779
 N
OG1
 OAE
O
4gtv 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 THR A:109 A:109 0.0 0.0 H -70.9 -45.8 0.0 0.0 0.0 7TR
HOH
 9.784
2.603
 N
OG1
 OAG
O
3dss 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 THR A:110 A:109 0.0 0.0 H -67.6 -48.3 0.0 0.0 0.0 HOH
 2.663
 OG1
 O
3dst 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 THR A:110 A:109 0.0 0.0 H -65.3 -50.2 0.0 0.0 0.0 HOH
 4.805
 N
 O
3dsu 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 THR A:110 A:109 0.0 0.0 H -68.9 -45.6 0.0 0.0 0.0 HOH
 4.802
 N
 O
3dsv 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 THR A:110 A:109 0.0 0.0 H -67.8 -48.1 0.0 0.0 0.0 HOH
 2.650
 OG1
 O
3dsw 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 THR A:110 A:109 0.0 0.0 H -69.4 -47.2 0.0 0.0 0.0 HOH
 4.754
 N
 O
3dsx 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 THR A:110 A:109 1.0 0.007 H -69.0 -46.6 1.0 0.007 0.0 HOH
 4.756
 N
 O
3hxb 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 THR A:110 A:109 0.0 0.0 H -64.2 -47.5 0.0 0.0 0.0 HOH
 6.006
 N
 O
3hxc 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 THR A:110 A:109 0.0 0.0 H -70.1 -47.0 0.0 0.0 0.0 HOH
 2.646
 OG1
 O
3hxd 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 THR A:110 A:109 0.0 0.0 H -72.1 -47.8 0.0 0.0 0.0 HOH
 2.608
 OG1
 O
3hxe 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 THR A:110 A:109 0.0 0.0 H -69.2 -46.6 0.0 0.0 0.0 HOH
 4.827
 N
 O
3hxf 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 THR A:110 A:109 0.0 0.0 H -75.8 -45.0 0.0 0.0 0.0 BD9
HOH
 9.828
4.822
 N
N
 C25
O
3c72 1 Q08602 81.82 1e-160 X-RAY
 2008-07-22 THR A:113 A:109 0.0 0.0 H -64.8 -53.5 0.0 0.0 0.0 HOH
 4.617
 N
 O
3pz1 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 THR A:111 A:109 0.0 0.0 H -66.0 -49.1 0.0 0.0 0.0 HOH
 4.807
 N
 O
3pz2 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 THR A:111 A:109 0.0 0.0 H -58.4 -49.5 0.0 0.0 0.0 3PZ
HOH
 9.610
4.225
 N
N
 O2
O
3pz3 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 THR A:111 A:109 0.0 0.0 H -70.2 -45.5 0.0 0.0 0.0 HOH
 2.740
 OG1
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q92696-f1 1 Q92696 100.0 0.0 THR A:109 A:109 0.0 0.0 H -69.5 -49.5