Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr14 24739637 . C A CCDS45088.1:NM_004581.5:c.142Gtg>Ttg_NP_004572.3:p.48V>L Homo sapiens Rab geranylgeranyltransferase alpha subunit (RABGGTA), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1dce 1 Q08602 91.36 0.0 X-RAY
 2000-03-24 VAL A:48 A:48 3.0 0.019 H -70.2 -34.8 3.0 0.019 0.0 HOH
 4.246
 CG2
 O
VAL C:48 C:48 2.0 0.013 H -65.9 -30.2 NA NA NA
1ltx 1 Q08602 91.36 0.0 X-RAY
 2003-05-21 VAL A:48 A:48 5.0 0.032 T -106.0 -35.4 5.0 0.032 0.0
4ehm 1 Q08602 81.82 1e-160 X-RAY
 2012-05-30 VAL A:48 A:48 5.0 0.032 H -71.7 -43.7 5.0 0.032 0.0 HOH
 5.948
 N
 O
4gts 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 VAL A:48 A:48 5.0 0.032 H -70.5 -39.3 5.0 0.032 0.0 HOH
 6.161
 O
 O
4gtt 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 VAL A:48 A:48 6.0 0.039 H -69.0 -38.7 6.0 0.039 0.0 HOH
 6.102
 N
 O
4gtv 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 VAL A:48 A:48 6.0 0.039 H -69.5 -41.8 6.0 0.039 0.0 HOH
 5.915
 C
 O
3dss 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 VAL A:49 A:48 6.0 0.039 H -65.4 -40.6 6.0 0.039 0.0 HOH
 4.280
 CG2
 O
3dst 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 VAL A:49 A:48 5.0 0.032 H 6.5 -76.4 5.0 0.032 0.0 HOH
 6.031
 C
 O
3dsu 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 VAL A:49 A:48 7.0 0.045 H -101.9 -33.1 7.0 0.045 0.0 HOH
 4.815
 N
 O
3dsv 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 VAL A:49 A:48 6.0 0.039 H -19.9 -58.9 6.0 0.039 0.0 HOH
 5.567
 CG1
 O
3dsw 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 VAL A:49 A:48 6.0 0.039 H 3.3 -76.7 6.0 0.039 0.0 HOH
 9.052
 C
 O
3dsx 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 VAL A:49 A:48 8.0 0.052 H -68.5 -41.3 8.0 0.052 0.0 HOH
 5.892
 N
 O
3hxb 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 VAL A:49 A:48 7.0 0.045 H -80.2 -40.0 7.0 0.045 0.0 HOH
 6.629
 N
 O
3hxc 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 VAL A:49 A:48 6.0 0.039 H -71.5 -42.5 6.0 0.039 0.0 HOH
 4.638
 N
 O
3hxd 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 VAL A:49 A:48 7.0 0.045 H -70.2 -43.9 7.0 0.045 0.0 HOH
 6.004
 C
 O
3hxe 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 VAL A:49 A:48 7.0 0.045 H -65.8 -40.9 7.0 0.045 0.0 HOH
 5.226
 N
 O
3hxf 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 VAL A:49 A:48 6.0 0.039 H -68.1 -38.7 6.0 0.039 0.0 HOH
 5.946
 N
 O
3c72 1 Q08602 81.82 1e-160 X-RAY
 2008-07-22 VAL A:52 A:48 7.0 0.045 H -73.2 -31.0 7.0 0.045 0.0 HOH
 9.050
 C
 O
3pz1 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 VAL A:50 A:48 6.0 0.039 H -70.1 -38.8 6.0 0.039 0.0 HOH
 5.788
 N
 O
3pz2 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 VAL A:50 A:48 5.0 0.032 H -69.6 -48.1 5.0 0.032 0.0 HOH
 9.069
 CG2
 O
3pz3 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 VAL A:50 A:48 7.0 0.045 H -72.2 -39.6 7.0 0.045 0.0 HOH
 6.045
 N
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q92696-f1 1 Q92696 100.0 0.0 VAL A:48 A:48 2.0 0.013 H -68.8 -37.1