Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr14 24739664 . G A CCDS45088.1:NM_004581.5:c.115Cgc>Tgc_NP_004572.3:p.39R>C Homo sapiens Rab geranylgeranyltransferase alpha subunit (RABGGTA), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1dce 1 Q08602 91.36 0.0 X-RAY
 2000-03-24 ARG A:39 A:39 80.0 0.356 H -69.8 -47.5 50.0 0.222 0.134 B:Q08603:0.133
 HOH
 2.473
 NH1
 O
ARG C:39 C:39 81.0 0.36 H -65.3 -49.5 NA NA NA
1ltx 1 Q08602 91.36 0.0 X-RAY
 2003-05-21 ARG A:39 A:39 82.0 0.364 H -145.0 -47.3 65.0 0.289 0.075 B:Q08603:0.076
 HOH
 4.039
 NH2
 O
4ehm 1 Q08602 81.82 1e-160 X-RAY
 2012-05-30 ARG A:39 A:39 79.0 0.351 H -73.4 -45.1 51.0 0.227 0.124 B:Q08603:0.124
 HOH
 3.553
 NH2
 O
4gts 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 ARG A:39 A:39 82.0 0.364 H -77.0 -43.5 53.0 0.236 0.128 B:Q08603:0.129
 HOH
 3.894
 NH1
 O
4gtt 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 ARG A:39 A:39 82.0 0.364 H -71.3 -42.8 54.0 0.24 0.124 B:Q08603:0.124
 HOH
 2.903
 O
 O
4gtv 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 ARG A:39 A:39 87.0 0.387 H -64.8 -46.2 57.0 0.253 0.134 B:Q08603:0.133
 HOH
 2.809
 NH1
 O
3dss 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 ARG A:40 A:39 85.0 0.378 H -61.7 -48.0 54.0 0.24 0.138 B:Q08603:0.138
 HOH
 2.967
 NH1
 O
3dst 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 ARG A:40 A:39 78.0 0.347 H -67.6 -48.8 49.0 0.218 0.129 B:Q08603:0.129
 HOH
 3.842
 NH2
 O
3dsu 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 ARG A:40 A:39 86.0 0.382 H -65.2 -48.6 54.0 0.24 0.142 B:Q08603:0.142
 HOH
 3.605
 NH1
 O
3dsv 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 ARG A:40 A:39 85.0 0.378 H -72.5 -43.6 56.0 0.249 0.129 B:Q08603:0.129
 HOH
 2.833
 O
 O
3dsw 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 ARG A:40 A:39 83.0 0.369 H -77.9 -45.9 52.0 0.231 0.138 B:Q08603:0.138
 HOH
 4.411
 NH1
 O
3dsx 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 ARG A:40 A:39 85.0 0.378 H -70.9 -44.3 53.0 0.236 0.142 B:Q08603:0.142
 HOH
 7.230
 NH2
 O
3hxb 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 ARG A:40 A:39 89.0 0.396 H -83.0 -46.8 58.0 0.258 0.138 B:Q08603:0.138
 HOH
 7.333
 NH2
 O
3hxc 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 ARG A:40 A:39 86.0 0.382 H -69.4 -47.3 55.0 0.244 0.138 B:Q08603:0.138
 HOH
 3.654
 NH1
 O
3hxd 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 ARG A:40 A:39 84.0 0.373 H -71.4 -47.1 54.0 0.24 0.133 B:Q08603:0.133
 HOH
 3.611
 NH2
 O
3hxe 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 ARG A:40 A:39 88.0 0.391 H -67.0 -44.5 58.0 0.258 0.133 B:Q08603:0.133
 HOH
 3.759
 NH2
 O
3hxf 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 ARG A:40 A:39 83.0 0.369 H -66.5 -50.6 54.0 0.24 0.129 B:Q08603:0.129
 HOH
 2.730
 O
 O
3c72 1 Q08602 81.82 1e-160 X-RAY
 2008-07-22 ARG A:43 A:39 73.0 0.324 H -76.5 -50.1 43.0 0.191 0.133 B:Q08603:0.133
 HOH
 3.705
 NH2
 O
3pz1 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 ARG A:41 A:39 82.0 0.364 H -67.6 -43.1 53.0 0.236 0.128 B:Q08603:0.129
 HOH
 2.645
 O
 O
3pz2 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 ARG A:41 A:39 81.0 0.36 H -72.4 -52.1 50.0 0.222 0.138 B:Q08603:0.138
 HOH
 4.431
 NH1
 O
3pz3 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 ARG A:41 A:39 86.0 0.382 H -70.0 -40.9 57.0 0.253 0.129 B:Q08603:0.129
 HOH
 3.573
 NH2
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q92696-f1 1 Q92696 100.0 0.0 ARG A:39 A:39 83.0 0.369 H -59.6 -41.6