Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr14 24740069 . A C CCDS45088.1:NM_004581.5:c.88Tca>Gca_NP_004572.3:p.30S>A Homo sapiens Rab geranylgeranyltransferase alpha subunit (RABGGTA), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1dce 1 Q08602 91.36 0.0 X-RAY
 2000-03-24 SER A:30 A:30 67.0 0.583 H -68.9 -42.0 67.0 0.583 0.0 HOH
 5.406
 N
 O
SER C:30 C:30 70.0 0.609 H -79.3 -35.8 NA NA NA
1ltx 1 Q08602 91.36 0.0 X-RAY
 2003-05-21 SER A:30 A:30 54.0 0.47 H -53.1 -53.1 54.0 0.47 0.0
4ehm 1 Q08602 81.82 1e-160 X-RAY
 2012-05-30 SER A:30 A:30 60.0 0.522 H -65.1 -45.4 60.0 0.522 0.0 HOH
 4.334
 O
 O
4gts 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 SER A:30 A:30 71.0 0.617 H -70.1 -43.8 71.0 0.617 0.0 HOH
 5.466
 N
 O
4gtt 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 SER A:30 A:30 57.0 0.496 H -75.4 -44.2 57.0 0.496 0.0 HOH
 4.447
 O
 O
4gtv 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 SER A:30 A:30 68.0 0.591 H -67.9 -38.4 68.0 0.591 0.0 HOH
 9.142
 O
 O
3dss 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 SER A:31 A:30 70.0 0.609 H -63.9 -44.0 70.0 0.609 0.0 HOH
 2.613
 O
 O
3dst 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 SER A:31 A:30 61.0 0.53 H -70.8 -40.1 61.0 0.53 0.0 HOH
 3.675
 CB
 O
3dsu 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 SER A:31 A:30 64.0 0.557 H -76.0 -34.8 64.0 0.557 0.0 HOH
 3.463
 CB
 O
3dsv 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 SER A:31 A:30 56.0 0.487 H -66.4 -42.7 56.0 0.487 0.0 HOH
 3.547
 CB
 O
3dsw 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 SER A:31 A:30 55.0 0.478 H -68.1 -44.0 55.0 0.478 0.0 HOH
 3.768
 O
 O
3dsx 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 SER A:31 A:30 54.0 0.47 H -70.4 -42.2 54.0 0.47 0.0 HOH
 4.163
 O
 O
3hxb 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 SER A:31 A:30 65.0 0.565 H -64.9 -42.3 65.0 0.565 0.0 HOH
 4.462
 O
 O
3hxc 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 SER A:31 A:30 81.0 0.704 H -66.2 -42.4 81.0 0.704 0.0 HOH
 3.388
 N
 O
3hxd 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 SER A:31 A:30 82.0 0.713 H -68.8 -40.9 82.0 0.713 0.0 HOH
 3.376
 N
 O
3hxe 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 SER A:31 A:30 60.0 0.522 H -66.5 -42.3 60.0 0.522 0.0 HOH
 3.446
 N
 O
3hxf 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 SER A:31 A:30 67.0 0.583 H -66.8 -43.3 67.0 0.583 0.0
3c72 1 Q08602 81.82 1e-160 X-RAY
 2008-07-22 SER A:34 A:30 75.0 0.652 H -62.7 -48.9 75.0 0.652 0.0 HOH
 4.861
 O
 O
3pz1 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 SER A:32 A:30 66.0 0.574 H -65.5 -41.7 66.0 0.574 0.0 HOH
 3.680
 O
 O
3pz2 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 SER A:32 A:30 73.0 0.635 H -72.5 -43.4 73.0 0.635 0.0 HOH
 7.346
 N
 O
3pz3 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 SER A:32 A:30 60.0 0.522 H -72.8 -40.1 60.0 0.522 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q92696-f1 1 Q92696 100.0 0.0 SER A:30 A:30 62.0 0.539 H -63.9 -43.6