Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr14 24740095 . C A CCDS45088.1:NM_004581.5:c.62cGa>cTa_NP_004572.3:p.21R>L Homo sapiens Rab geranylgeranyltransferase alpha subunit (RABGGTA), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1dce 1 Q08602 91.36 0.0 X-RAY
 2000-03-24 ARG A:21 A:21 75.0 NA 59.9 23.4 75.0 NA NA HOH
 6.391
 O
 O
ARG C:21 C:21 51.0 NA T 113.2 -8.4 NA NA NA
1ltx 1 Q08602 91.36 0.0 X-RAY
 2003-05-21 ARG A:21 NA:NA DO NA DO DO DO NA NA NA
4ehm 1 Q08602 81.82 1e-160 X-RAY
 2012-05-30 ARG A:21 A:21 62.0 NA H -60.2 -44.9 32.0 NA NA B:Q08603:NA
 HOH
 7.310
 CB
 O
4gts 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 ARG A:21 A:21 52.0 NA H -60.6 -44.1 27.0 NA NA B:Q08603:NA
 HOH
 2.663
 N
 O
4gtt 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 ARG A:21 A:21 196.0 0.871 H -78.2 -20.8 126.0 0.56 0.311 B:Q08603:0.311
 7TQ
HOH
 9.823
6.610
 NH1
CG
 CAA
O
4gtv 1 Q08602 81.82 1e-160 X-RAY
 2012-10-24 ARG A:21 A:21 199.0 0.884 H -81.2 -0.4 141.0 0.627 0.257 B:Q08603:0.258
 HOH
 8.211
 NH2
 O
3dss 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 ARG A:22 A:21 173.0 0.769 H -75.2 -29.4 143.0 0.636 0.133 B:Q08603:0.133
 HOH
 4.298
 NH1
 O
3dst 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 ARG A:22 A:21 197.0 0.876 H -78.5 -21.8 113.0 0.502 0.374 B:Q08603:0.373
 HOH
 3.510
 NH2
 O
3dsu 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 ARG A:22 A:21 192.0 0.853 H -85.1 -17.8 131.0 0.582 0.271 B:Q08603:0.271
 HOH
 5.104
 CB
 O
3dsv 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 ARG A:22 A:21 189.0 0.84 H -76.5 -23.2 128.0 0.569 0.271 B:Q08603:0.271
 HOH
 5.460
 NH2
 O
3dsw 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 ARG A:22 A:21 203.0 0.902 H -67.5 -37.4 140.0 0.622 0.28 B:Q08603:0.28
 HOH
 9.677
 NH2
 O
3dsx 1 Q08602 81.82 1e-160 X-RAY
 2008-09-09 ARG A:22 A:21 189.0 0.84 H -72.6 -21.9 122.0 0.542 0.298 B:Q08603:0.298
 HOH
 8.072
 NH2
 O
3hxb 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 ARG A:22 A:21 57.0 NA H -65.4 -33.3 32.0 NA NA B:Q08603:NA
3hxc 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 ARG A:22 A:21 64.0 NA H -63.5 -38.6 36.0 NA NA B:Q08603:NA
 HOH
 5.955
 CB
 O
3hxd 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 ARG A:22 A:21 58.0 NA H -65.9 -41.0 35.0 NA NA B:Q08603:NA
 HOH
 5.760
 N
 O
3hxe 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 ARG A:22 A:21 61.0 NA H -58.9 -34.2 36.0 NA NA B:Q08603:NA
 HOH
 9.782
 N
 O
3hxf 1 Q08602 81.82 1e-160 X-RAY
 2009-09-08 ARG A:22 A:21 59.0 NA H -46.4 -57.3 44.0 NA NA B:Q08603:NA
3c72 1 Q08602 81.82 1e-160 X-RAY
 2008-07-22 ARG A:25 A:21 60.0 NA H -66.1 -57.1 45.0 NA NA B:Q08603:NA
3pz1 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 ARG A:23 A:21 188.0 0.836 H -72.1 -8.1 110.0 0.489 0.347 B:Q08603:0.347
 HOH
 8.137
 NH2
 O
3pz2 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 ARG A:23 A:21 195.0 0.867 H -101.8 -6.6 169.0 0.751 0.116 B:Q08603:0.116
 HOH
 5.708
 O
 O
3pz3 1 Q08602 81.82 1e-160 X-RAY
 2011-05-11 ARG A:23 A:21 188.0 0.836 H -67.7 -25.0 121.0 0.538 0.298 B:Q08603:0.298

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q92696-f1 1 Q92696 100.0 0.0 ARG A:21 A:21 180.0 0.8 H -67.8 -39.2