Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr14 66082979 . A C CCDS9775.1:NM_178155.2:c.370Aaa>Caa_NP_835368.1:p.124K>Q Homo sapiens fucosyltransferase 8 (FUT8), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6x5h 1 Q9BYC5 100.0 0.0 X-RAY
 2020-10-07 LYS A:84 A:124 105.0 0.525 H -62.2 -42.9 52.0 0.26 0.265 D:Q9BYC5:0.265
 HOH
 3.764
 CD
 O
LYS B:84 B:124 100.0 0.5 H -63.1 -43.0 NA NA NA
LYS C:84 C:124 103.0 0.515 H -65.0 -42.3 NA NA NA
LYS D:84 D:124 104.0 0.52 H -63.7 -42.7 NA NA NA
6x5r 1 Q9BYC5 100.0 0.0 X-RAY
 2020-10-07 LYS A:84 A:124 110.0 0.55 H -60.8 -46.1 NA NA NA
LYS B:84 B:124 115.0 0.575 H -62.1 -47.0 60.0 0.3 0.275 A:Q9BYC5:0.275
 MN
HOH
 6.415
5.378
 CD
NZ
 MN
O
6x5t 1 Q9BYC5 100.0 0.0 X-RAY
 2020-10-07 LYS A:84 A:124 95.0 0.475 H -58.2 -52.3 49.0 0.245 0.23 B:Q9BYC5:0.23
 HOH
 5.405
 NZ
 O
LYS B:84 B:124 96.0 0.48 H -57.4 -50.1 50.0 0.25 0.23 A:Q9BYC5:0.23
 HOH
 4.218
 CD
 O
LYS C:84 C:124 94.0 0.47 H -58.9 -52.3 NA NA NA
LYS D:84 D:124 98.0 0.49 H -58.5 -51.7 NA NA NA
LYS E:84 E:124 92.0 0.46 H -57.8 -51.7 NA NA NA
LYS F:84 F:124 91.0 0.455 H -57.7 -51.4 NA NA NA
LYS G:84 G:124 97.0 0.485 H -58.3 -51.2 NA NA NA
LYS H:84 H:124 92.0 0.46 H -57.5 -52.8 NA NA NA
6x5u 1 Q9BYC5 100.0 0.0 X-RAY
 2020-10-07 LYS A:84 A:124 113.0 0.565 H -59.5 -53.5 63.0 0.315 0.25 B:Q9BYC5:0.25
 HOH
 8.536
 CG
 O
LYS B:84 B:124 104.0 0.52 H -58.0 -53.3 52.0 0.26 0.26 A:Q9BYC5:0.26
 HOH
 4.013
 CE
 O
LYS C:84 C:124 96.0 0.48 H -58.4 -52.4 NA NA NA
LYS D:84 D:124 100.0 0.5 H -59.0 -51.7 NA NA NA
LYS E:84 E:124 106.0 0.53 H -59.3 -54.7 NA NA NA
LYS F:84 F:124 97.0 0.485 H -58.5 -52.2 NA NA NA
LYS G:84 G:124 108.0 0.54 H -59.9 -53.9 NA NA NA
LYS H:84 H:124 96.0 0.48 H -58.9 -54.8 NA NA NA
2de0 1 Q9BYC5 100.0 0.0 X-RAY
 2006-12-26 LYS A:62 X:124 107.0 0.535 H -69.7 -50.9 53.0 0.265 0.27 A:Q9BYC5:0.27
 HOH
 2.635
 CD
 O
6vlf 1 Q9WTS2 96.07 0.0 X-RAY
 2020-02-26 LYS A:92 A:124 109.0 0.545 H -62.7 -41.7 56.0 0.28 0.265 B:Q9WTS2:0.265
 EDO
HOH
 8.713
2.986
 O
NZ
 O1
O
LYS B:92 B:124 123.0 0.615 H -62.8 -44.5 58.0 0.29 0.325 A:Q9WTS2:0.325
 HOH
 2.506
 NZ
 O
6vlg 1 Q9WTS2 96.07 0.0 X-RAY
 2020-02-26 LYS A:92 A:124 114.0 0.57 H -61.3 -48.8 NA NA NA
LYS B:92 B:124 118.0 0.59 H -55.4 -47.8 NA NA NA
LYS C:92 C:124 105.0 0.525 H -56.5 -49.1 57.0 0.285 0.24 A:Q9WTS2:0.24
 HOH
 3.073
 NZ
 O
LYS D:92 D:124 118.0 0.59 H -58.9 -48.9 NA NA NA
6vld 1 Q9BYC5 100.0 0.0 X-RAY
 2020-02-26 LYS A:20 A:124 119.0 0.595 H -60.1 -47.7 55.0 0.275 0.32 D:Q9BYC5:0.32
 HOH
 3.507
 CD
 O
LYS B:20 B:124 111.0 0.555 H -64.6 -38.3 NA NA NA
LYS C:20 G:124 111.0 0.555 H -62.9 -46.4 NA NA NA
LYS D:20 H:124 116.0 0.58 H -65.4 -42.5 50.0 0.25 0.33 A:Q9BYC5:0.33
 HOH
 3.228
 CE
 O
6vle 1 Q9BYC5 100.0 0.0 X-RAY
 2020-02-26 LYS A:20 A:124 106.0 0.53 H -66.0 -44.0 56.0 0.28 0.25 B:Q9BYC5:0.25
 HOH
 2.823
 NZ
 O
LYS B:20 B:124 108.0 0.54 H -69.5 -44.8 55.0 0.275 0.265 A:Q9BYC5:0.265
 HOH
 3.757
 CD
 O
6tkv 1 Q9BYC5 100.0 0.0 X-RAY
 2020-01-29 LYS A:18 A:124 108.0 0.54 H -63.5 -46.1 NA NA NA
6x5s 1 Q9BYC5 100.0 0.0 X-RAY
 2020-10-07 LYS A:17 A:124 115.0 0.575 H -58.1 -50.8 39.0 0.195 0.38 B:Q9BYC5:0.38
LYS B:17 B:124 103.0 0.515 H -60.3 -46.4 NA NA NA
6tkv 2 Q9BYC5 96.79 0.0 X-RAY
 2020-01-29 LYS B:17 B:124 116.0 0.58 H -63.9 -44.2 64.0 0.32 0.26 A:Q9BYC5:0.26
 GOL
HOH
 2.775
4.253
 NZ
CB
 O2
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9byc5-f1 1 Q9BYC5 100.0 0.0 LYS A:124 A:124 97.0 0.485 H -66.0 -45.5