Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr14 66136078 . C A CCDS9775.1:NM_178155.2:c.715Cga>Aga_NP_835368.1:p.239R>R Homo sapiens fucosyltransferase 8 (FUT8), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6x5h 1 Q9BYC5 100.0 0.0 X-RAY
 2020-10-07 ARG A:199 A:239 13.0 0.058 -110.5 136.7 13.0 0.058 0.0 HOH
 2.727
 NE
 O
ARG B:199 B:239 12.0 0.053 -110.3 136.2 NA NA NA
ARG C:199 C:239 12.0 0.053 -109.4 137.2 NA NA NA
ARG D:199 D:239 13.0 0.058 -108.6 136.6 NA NA NA
6x5r 1 Q9BYC5 100.0 0.0 X-RAY
 2020-10-07 ARG A:199 A:239 12.0 0.053 -108.5 136.5 NA NA NA
ARG B:199 B:239 14.0 0.062 -108.0 136.3 14.0 0.062 0.0 HOH
 2.805
 NE
 O
6x5t 1 Q9BYC5 100.0 0.0 X-RAY
 2020-10-07 ARG A:199 A:239 14.0 0.062 -113.9 136.6 14.0 0.062 0.0 HOH
 7.046
 NH2
 O
ARG B:199 B:239 17.0 0.076 -114.4 135.6 17.0 0.076 0.0 HOH
 7.052
 NH2
 O
ARG C:199 C:239 18.0 0.08 -114.0 136.8 NA NA NA
ARG D:199 D:239 17.0 0.076 -113.9 137.2 NA NA NA
ARG E:199 E:239 19.0 0.084 -115.2 137.3 NA NA NA
ARG F:199 F:239 14.0 0.062 -114.1 136.8 NA NA NA
ARG G:199 G:239 18.0 0.08 -114.4 136.6 NA NA NA
ARG H:199 H:239 16.0 0.071 -113.7 136.7 NA NA NA
6x5u 1 Q9BYC5 100.0 0.0 X-RAY
 2020-10-07 ARG A:199 A:239 11.0 0.049 -117.4 143.1 11.0 0.049 0.0
ARG B:199 B:239 11.0 0.049 -115.5 143.2 11.0 0.049 0.0 HOH
 4.834
 C
 O
ARG C:199 C:239 11.0 0.049 -116.4 142.6 NA NA NA
ARG D:199 D:239 13.0 0.058 -115.7 142.9 NA NA NA
ARG E:199 E:239 14.0 0.062 -115.6 143.2 NA NA NA
ARG F:199 F:239 9.0 0.04 -116.6 143.5 NA NA NA
ARG G:199 G:239 11.0 0.049 -116.1 143.3 NA NA NA
ARG H:199 H:239 16.0 0.071 -115.4 144.3 NA NA NA
2de0 1 Q9BYC5 100.0 0.0 X-RAY
 2006-12-26 ARG A:177 X:239 10.0 0.044 -119.2 139.3 10.0 0.044 0.0 HOH
 9.294
 NH2
 O
6vlf 1 Q9WTS2 96.07 0.0 X-RAY
 2020-02-26 ARG A:207 A:239 25.0 0.111 -106.7 136.1 25.0 0.111 0.0 EDO
HOH
 6.300
2.945
 C
NE
 O2
O
ARG B:207 B:239 6.0 0.027 -113.1 135.5 6.0 0.027 0.0 HOH
 2.718
 NE
 O
6vlg 1 Q9WTS2 96.07 0.0 X-RAY
 2020-02-26 ARG A:207 A:239 5.0 0.022 -110.2 139.4 NA NA NA
ARG B:207 B:239 5.0 0.022 -105.8 137.6 NA NA NA
ARG C:207 C:239 5.0 0.022 -112.9 139.4 5.0 0.022 0.0 HOH
 4.519
 NH2
 O
ARG D:207 D:239 4.0 0.018 -117.9 139.2 NA NA NA
6vld 1 Q9BYC5 100.0 0.0 X-RAY
 2020-02-26 ARG A:135 A:239 11.0 0.049 -114.3 135.5 11.0 0.049 0.0 HOH
 3.186
 NE
 O
ARG B:135 B:239 16.0 0.071 -111.2 145.5 NA NA NA
ARG C:135 G:239 13.0 0.058 -106.4 134.3 NA NA NA
ARG D:135 H:239 12.0 0.053 -112.0 135.6 12.0 0.053 0.0 HOH
 2.963
 NE
 O
6vle 1 Q9BYC5 100.0 0.0 X-RAY
 2020-02-26 ARG A:135 A:239 14.0 0.062 -124.5 133.7 14.0 0.062 0.0 HOH
 3.114
 NE
 O
ARG B:135 B:239 14.0 0.062 -118.5 134.0 14.0 0.062 0.0 HOH
 4.640
 NE
 O
6tkv 1 Q9BYC5 100.0 0.0 X-RAY
 2020-01-29 ARG A:133 A:239 13.0 0.058 -113.9 132.2 NA NA NA
6x5s 1 Q9BYC5 100.0 0.0 X-RAY
 2020-10-07 ARG A:132 A:239 15.0 0.067 -111.7 136.2 15.0 0.067 0.0 CL
 9.692
 NE
 CL
ARG B:132 B:239 15.0 0.067 -111.7 134.7 NA NA NA
6tkv 2 Q9BYC5 96.79 0.0 X-RAY
 2020-01-29 ARG B:132 B:239 15.0 0.067 -113.8 133.3 15.0 0.067 0.0 GOL
GOL
HOH
 6.772
4.152
3.047
 NH1
CA
NE
 O2
C3
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9byc5-f1 1 Q9BYC5 100.0 0.0 ARG A:239 A:239 9.0 0.04 -117.0 132.1