Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr14 | 66136079 | . | G | A | CCDS9775.1:NM_178155.2:c.716cGa>cAa_NP_835368.1:p.239R>Q | Homo sapiens fucosyltransferase 8 (FUT8), transcript variant 1, mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
6x5h | 1 | Q9BYC5 | 100.0 | 0.0 |
X-RAY |
2020-10-07 | ARG | A:199 | A:239 | 13.0 | 0.058 | -110.5 | 136.7 | 13.0 | 0.058 | 0.0 |
HOH |
2.727 |
NE |
O |
|||
ARG | B:199 | B:239 | 12.0 | 0.053 | -110.3 | 136.2 | NA | NA | NA | ||||||||||||||
ARG | C:199 | C:239 | 12.0 | 0.053 | -109.4 | 137.2 | NA | NA | NA | ||||||||||||||
ARG | D:199 | D:239 | 13.0 | 0.058 | -108.6 | 136.6 | NA | NA | NA | ||||||||||||||
6x5r | 1 | Q9BYC5 | 100.0 | 0.0 |
X-RAY |
2020-10-07 | ARG | A:199 | A:239 | 12.0 | 0.053 | -108.5 | 136.5 | NA | NA | NA | |||||||
ARG | B:199 | B:239 | 14.0 | 0.062 | -108.0 | 136.3 | 14.0 | 0.062 | 0.0 |
HOH |
2.805 |
NE |
O |
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6x5t | 1 | Q9BYC5 | 100.0 | 0.0 |
X-RAY |
2020-10-07 | ARG | A:199 | A:239 | 14.0 | 0.062 | -113.9 | 136.6 | 14.0 | 0.062 | 0.0 |
HOH |
7.046 |
NH2 |
O |
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ARG | B:199 | B:239 | 17.0 | 0.076 | -114.4 | 135.6 | 17.0 | 0.076 | 0.0 |
HOH |
7.052 |
NH2 |
O |
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ARG | C:199 | C:239 | 18.0 | 0.08 | -114.0 | 136.8 | NA | NA | NA | ||||||||||||||
ARG | D:199 | D:239 | 17.0 | 0.076 | -113.9 | 137.2 | NA | NA | NA | ||||||||||||||
ARG | E:199 | E:239 | 19.0 | 0.084 | -115.2 | 137.3 | NA | NA | NA | ||||||||||||||
ARG | F:199 | F:239 | 14.0 | 0.062 | -114.1 | 136.8 | NA | NA | NA | ||||||||||||||
ARG | G:199 | G:239 | 18.0 | 0.08 | -114.4 | 136.6 | NA | NA | NA | ||||||||||||||
ARG | H:199 | H:239 | 16.0 | 0.071 | -113.7 | 136.7 | NA | NA | NA | ||||||||||||||
6x5u | 1 | Q9BYC5 | 100.0 | 0.0 |
X-RAY |
2020-10-07 | ARG | A:199 | A:239 | 11.0 | 0.049 | -117.4 | 143.1 | 11.0 | 0.049 | 0.0 | |||||||
ARG | B:199 | B:239 | 11.0 | 0.049 | -115.5 | 143.2 | 11.0 | 0.049 | 0.0 |
HOH |
4.834 |
C |
O |
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ARG | C:199 | C:239 | 11.0 | 0.049 | -116.4 | 142.6 | NA | NA | NA | ||||||||||||||
ARG | D:199 | D:239 | 13.0 | 0.058 | -115.7 | 142.9 | NA | NA | NA | ||||||||||||||
ARG | E:199 | E:239 | 14.0 | 0.062 | -115.6 | 143.2 | NA | NA | NA | ||||||||||||||
ARG | F:199 | F:239 | 9.0 | 0.04 | -116.6 | 143.5 | NA | NA | NA | ||||||||||||||
ARG | G:199 | G:239 | 11.0 | 0.049 | -116.1 | 143.3 | NA | NA | NA | ||||||||||||||
ARG | H:199 | H:239 | 16.0 | 0.071 | -115.4 | 144.3 | NA | NA | NA | ||||||||||||||
2de0 | 1 | Q9BYC5 | 100.0 | 0.0 |
X-RAY |
2006-12-26 | ARG | A:177 | X:239 | 10.0 | 0.044 | -119.2 | 139.3 | 10.0 | 0.044 | 0.0 |
HOH |
9.294 |
NH2 |
O |
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6vlf | 1 | Q9WTS2 | 96.07 | 0.0 |
X-RAY |
2020-02-26 | ARG | A:207 | A:239 | 25.0 | 0.111 | -106.7 | 136.1 | 25.0 | 0.111 | 0.0 |
EDO HOH |
6.300 2.945 |
C NE |
O2 O |
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ARG | B:207 | B:239 | 6.0 | 0.027 | -113.1 | 135.5 | 6.0 | 0.027 | 0.0 |
HOH |
2.718 |
NE |
O |
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6vlg | 1 | Q9WTS2 | 96.07 | 0.0 |
X-RAY |
2020-02-26 | ARG | A:207 | A:239 | 5.0 | 0.022 | -110.2 | 139.4 | NA | NA | NA | |||||||
ARG | B:207 | B:239 | 5.0 | 0.022 | -105.8 | 137.6 | NA | NA | NA | ||||||||||||||
ARG | C:207 | C:239 | 5.0 | 0.022 | -112.9 | 139.4 | 5.0 | 0.022 | 0.0 |
HOH |
4.519 |
NH2 |
O |
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ARG | D:207 | D:239 | 4.0 | 0.018 | -117.9 | 139.2 | NA | NA | NA | ||||||||||||||
6vld | 1 | Q9BYC5 | 100.0 | 0.0 |
X-RAY |
2020-02-26 | ARG | A:135 | A:239 | 11.0 | 0.049 | -114.3 | 135.5 | 11.0 | 0.049 | 0.0 |
HOH |
3.186 |
NE |
O |
|||
ARG | B:135 | B:239 | 16.0 | 0.071 | -111.2 | 145.5 | NA | NA | NA | ||||||||||||||
ARG | C:135 | G:239 | 13.0 | 0.058 | -106.4 | 134.3 | NA | NA | NA | ||||||||||||||
ARG | D:135 | H:239 | 12.0 | 0.053 | -112.0 | 135.6 | 12.0 | 0.053 | 0.0 |
HOH |
2.963 |
NE |
O |
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6vle | 1 | Q9BYC5 | 100.0 | 0.0 |
X-RAY |
2020-02-26 | ARG | A:135 | A:239 | 14.0 | 0.062 | -124.5 | 133.7 | 14.0 | 0.062 | 0.0 |
HOH |
3.114 |
NE |
O |
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ARG | B:135 | B:239 | 14.0 | 0.062 | -118.5 | 134.0 | 14.0 | 0.062 | 0.0 |
HOH |
4.640 |
NE |
O |
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6tkv | 1 | Q9BYC5 | 100.0 | 0.0 |
X-RAY |
2020-01-29 | ARG | A:133 | A:239 | 13.0 | 0.058 | -113.9 | 132.2 | NA | NA | NA | |||||||
6x5s | 1 | Q9BYC5 | 100.0 | 0.0 |
X-RAY |
2020-10-07 | ARG | A:132 | A:239 | 15.0 | 0.067 | -111.7 | 136.2 | 15.0 | 0.067 | 0.0 |
CL |
9.692 |
NE |
CL |
|||
ARG | B:132 | B:239 | 15.0 | 0.067 | -111.7 | 134.7 | NA | NA | NA | ||||||||||||||
6tkv | 2 | Q9BYC5 | 96.79 | 0.0 |
X-RAY |
2020-01-29 | ARG | B:132 | B:239 | 15.0 | 0.067 | -113.8 | 133.3 | 15.0 | 0.067 | 0.0 |
GOL GOL HOH |
6.772 4.152 3.047 |
NH1 CA NE |
O2 C3 O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-q9byc5-f1 | 1 | Q9BYC5 | 100.0 | 0.0 | ARG | A:239 | A:239 | 9.0 | 0.04 | -117.0 | 132.1 |