Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr14 66188666 . C A CCDS9775.1:NM_178155.2:c.1009Cgc>Agc_NP_835368.1:p.337R>S Homo sapiens fucosyltransferase 8 (FUT8), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6x5h 1 Q9BYC5 100.0 0.0 X-RAY
 2020-10-07 ARG A:297 A:337 63.0 0.28 -55.9 119.9 63.0 0.28 0.0 HOH
 2.809
 NH2
 O
ARG B:297 B:337 66.0 0.293 -57.5 118.3 NA NA NA
ARG C:297 C:337 64.0 0.284 -55.6 117.0 NA NA NA
ARG D:297 D:337 67.0 0.298 -56.8 114.5 NA NA NA
6x5r 1 Q9BYC5 100.0 0.0 X-RAY
 2020-10-07 ARG A:297 A:337 51.0 0.227 -48.0 117.3 NA NA NA
ARG B:297 B:337 53.0 0.236 -50.3 116.1 53.0 0.236 0.0 HOH
 2.704
 NH2
 O
6x5t 1 Q9BYC5 100.0 0.0 X-RAY
 2020-10-07 ARG A:297 A:337 71.0 0.316 -57.8 114.4 71.0 0.316 0.0 HOH
 4.423
 CG
 O
ARG B:297 B:337 50.0 0.222 -58.2 114.5 50.0 0.222 0.0 HOH
 2.719
 NH1
 O
ARG C:297 C:337 48.0 0.213 -56.8 114.9 NA NA NA
ARG D:297 D:337 51.0 0.227 -58.7 114.2 NA NA NA
ARG E:297 E:337 51.0 0.227 -58.5 114.0 NA NA NA
ARG F:297 F:337 71.0 0.316 -57.9 114.9 NA NA NA
ARG G:297 G:337 51.0 0.227 -58.2 114.6 NA NA NA
ARG H:297 H:337 69.0 0.307 -57.4 115.4 NA NA NA
6x5u 1 Q9BYC5 100.0 0.0 X-RAY
 2020-10-07 ARG A:297 A:337 41.0 0.182 -55.3 118.7 41.0 0.182 0.0 HOH
 4.016
 CD
 O
ARG B:297 B:337 46.0 0.204 -56.4 118.6 46.0 0.204 0.0 HOH
 3.544
 CD
 O
ARG C:297 C:337 50.0 0.222 -55.1 119.7 NA NA NA
ARG D:297 D:337 49.0 0.218 -57.0 119.1 NA NA NA
ARG E:297 E:337 44.0 0.196 -54.7 119.1 NA NA NA
ARG F:297 F:337 64.0 0.284 -57.1 119.7 NA NA NA
ARG G:297 G:337 43.0 0.191 -55.0 117.7 NA NA NA
ARG H:297 H:337 42.0 0.187 -56.7 117.5 NA NA NA
2de0 1 Q9BYC5 100.0 0.0 X-RAY
 2006-12-26 ARG A:275 X:337 64.0 0.284 -58.0 126.4 64.0 0.284 0.0 HOH
 3.591
 NH2
 O
6vlf 1 Q9WTS2 96.07 0.0 X-RAY
 2020-02-26 ARG A:305 A:337 50.0 0.222 -53.0 119.8 50.0 0.222 0.0 HOH
 2.916
 NH1
 O
ARG B:305 B:337 52.0 0.231 -49.6 119.1 52.0 0.231 0.0 EDO
HOH
 6.129
2.923
 N
NH1
 O2
O
6vlg 1 Q9WTS2 96.07 0.0 X-RAY
 2020-02-26 ARG A:305 A:337 66.0 0.293 -56.4 119.8 NA NA NA
ARG B:305 B:337 71.0 0.316 -56.6 123.8 NA NA NA
ARG C:305 C:337 52.0 0.231 -56.3 120.0 52.0 0.231 0.0 HOH
 2.968
 NH2
 O
ARG D:305 D:337 52.0 0.231 -56.1 120.8 NA NA NA
6vld 1 Q9BYC5 100.0 0.0 X-RAY
 2020-02-26 ARG A:233 A:337 50.0 0.222 -58.5 109.6 50.0 0.222 0.0 HOH
 3.022
 NH2
 O
ARG B:233 B:337 42.0 0.187 -59.6 114.7 NA NA NA
ARG C:233 G:337 49.0 0.218 -55.9 110.9 NA NA NA
ARG D:233 H:337 48.0 0.213 -53.3 112.4 48.0 0.213 0.0 HOH
 2.916
 NH1
 O
6vle 1 Q9BYC5 100.0 0.0 X-RAY
 2020-02-26 ARG A:233 A:337 47.0 0.209 -61.1 110.9 47.0 0.209 0.0 HOH
 2.976
 NH2
 O
ARG B:233 B:337 45.0 0.2 -63.6 113.3 45.0 0.2 0.0 HOH
 3.065
 NH2
 O
6tkv 1 Q9BYC5 100.0 0.0 X-RAY
 2020-01-29 ARG A:231 A:337 50.0 0.222 -51.3 117.5 NA NA NA
6x5s 1 Q9BYC5 100.0 0.0 X-RAY
 2020-10-07 ARG A:230 A:337 54.0 0.24 -47.0 120.3 54.0 0.24 0.0
ARG B:230 B:337 55.0 0.244 -51.0 108.9 NA NA NA
6tkv 2 Q9BYC5 96.79 0.0 X-RAY
 2020-01-29 ARG B:230 B:337 49.0 0.218 -56.1 117.7 49.0 0.218 0.0 HOH
 2.882
 NH1
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9byc5-f1 1 Q9BYC5 100.0 0.0 ARG A:337 A:337 61.0 0.271 -57.3 111.8