Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr14 66200008 . A C CCDS9775.1:NM_178155.2:c.1319aAt>aCt_NP_835368.1:p.440N>T Homo sapiens fucosyltransferase 8 (FUT8), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6x5h 1 Q9BYC5 100.0 0.0 X-RAY
 2020-10-07 ASN A:400 A:440 90.0 0.562 G -98.4 -0.3 90.0 0.562 0.0 GDP
HOH
 7.634
2.709
 O
OD1
 O2'
O
ASN B:400 B:440 93.0 0.581 G -97.9 -0.5 NA NA NA
ASN C:400 NA:NA DO NA DO DO DO NA NA NA
ASN D:400 NA:NA DO NA DO DO DO NA NA NA
6x5r 1 Q9BYC5 100.0 0.0 X-RAY
 2020-10-07 ASN A:400 A:440 40.0 0.25 T -139.2 6.1 NA NA NA
ASN B:400 B:440 58.0 0.362 G -139.1 19.0 58.0 0.362 0.0 GDP
HOH
 7.636
2.828
 O
O
 O2'
O
6x5t 1 Q9BYC5 100.0 0.0 X-RAY
 2020-10-07 ASN A:400 A:440 61.0 0.381 G -126.7 17.8 61.0 0.381 0.0 GDP
GOL
HOH
 7.263
8.031
5.538
 O
ND2
O
 O2'
O1
O
ASN B:400 B:440 57.0 0.356 T -133.8 18.3 57.0 0.356 0.0 GDP
HOH
 7.526
2.573
 O
O
 O2'
O
ASN C:400 C:440 63.0 0.394 T -132.2 15.4 NA NA NA
ASN D:400 D:440 77.0 0.481 G -133.0 18.6 NA NA NA
ASN E:400 E:440 54.0 0.338 T -133.2 18.3 NA NA NA
ASN F:400 F:440 64.0 0.4 T -130.8 14.0 NA NA NA
ASN G:400 G:440 54.0 0.338 G -131.4 19.0 NA NA NA
ASN H:400 H:440 69.0 0.431 T -127.6 13.0 NA NA NA
6x5u 1 Q9BYC5 100.0 0.0 X-RAY
 2020-10-07 ASN A:400 A:440 99.0 0.619 T -113.6 11.7 99.0 0.619 0.0 GDP
 7.476
 O
 O2'
ASN B:400 B:440 55.0 0.344 T -114.9 13.7 55.0 0.344 0.0 GDP
HOH
 7.582
6.348
 O
ND2
 O2'
O
ASN C:400 C:440 65.0 0.406 T -112.0 10.2 NA NA NA
ASN D:400 D:440 53.0 0.331 T -114.1 13.0 NA NA NA
ASN E:400 E:440 69.0 0.431 T -114.1 10.1 NA NA NA
ASN F:400 F:440 68.0 0.425 H -113.4 8.1 NA NA NA
ASN G:400 G:440 54.0 0.338 T -114.0 11.5 NA NA NA
ASN H:400 H:440 61.0 0.381 T -113.4 11.6 NA NA NA
2de0 1 Q9BYC5 100.0 0.0 X-RAY
 2006-12-26 ASN A:378 X:440 56.0 0.35 G -62.8 -14.1 56.0 0.35 0.0 HOH
 3.438
 O
 O
6vlf 1 Q9WTS2 96.07 0.0 X-RAY
 2020-02-26 ASN A:408 NA:NA DO NA DO DO DO NA NA NA
ASN B:408 NA:NA DO NA DO DO DO NA NA NA
6vlg 1 Q9WTS2 96.07 0.0 X-RAY
 2020-02-26 ASN A:408 A:440 75.0 0.469 T -119.1 10.7 NA NA NA
ASN B:408 B:440 74.0 0.463 T -111.8 1.5 NA NA NA
ASN C:408 C:440 62.0 0.388 G -140.4 23.7 62.0 0.388 0.0 GDP
HOH
 7.981
2.890
 O
O
 O2'
O
ASN D:408 D:440 58.0 0.362 G -136.0 27.0 NA NA NA
6vld 1 Q9BYC5 100.0 0.0 X-RAY
 2020-02-26 ASN A:336 A:440 71.0 0.444 S -102.3 28.6 71.0 0.444 0.0 GDP
HOH
 7.522
2.288
 O
ND2
 O2'
O
ASN B:336 B:440 65.0 0.406 T -132.1 19.3 NA NA NA
ASN C:336 G:440 73.0 0.456 -134.0 106.5 NA NA NA
ASN D:336 NA:NA DO NA DO DO DO NA NA NA
6vle 1 Q9BYC5 100.0 0.0 X-RAY
 2020-02-26 ASN A:336 A:440 58.0 0.362 G -64.2 -29.2 58.0 0.362 0.0 HOH
 5.628
 N
 O
ASN B:336 B:440 61.0 0.381 G -65.0 -25.3 61.0 0.381 0.0 HOH
 5.955
 O
 O
6tkv 1 Q9BYC5 100.0 0.0 X-RAY
 2020-01-29 ASN A:334 A:440 44.0 0.275 T -132.1 -0.8 NA NA NA
6x5s 1 Q9BYC5 100.0 0.0 X-RAY
 2020-10-07 ASN A:333 A:440 56.0 0.35 G -142.2 31.6 56.0 0.35 0.0 GDP
 6.967
 O
 O2'
ASN B:333 B:440 59.0 0.369 G -142.9 35.4 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9byc5-f1 1 Q9BYC5 100.0 0.0 ASN A:440 A:440 90.0 0.562 T -119.4 -0.8