Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr14 66209072 . G A CCDS9775.1:NM_178155.2:c.1672Gtt>Att_NP_835368.1:p.558V>I Homo sapiens fucosyltransferase 8 (FUT8), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6x5h 1 Q9BYC5 100.0 0.0 X-RAY
 2020-10-07 VAL A:518 A:558 16.0 0.103 E -129.7 160.5 16.0 0.103 0.0 HOH
 3.650
 CG2
 O
VAL B:518 B:558 17.0 0.11 E -127.9 161.0 NA NA NA
VAL C:518 C:558 16.0 0.103 E -129.4 161.1 NA NA NA
VAL D:518 D:558 16.0 0.103 E -128.7 162.1 NA NA NA
6x5r 1 Q9BYC5 100.0 0.0 X-RAY
 2020-10-07 VAL A:518 A:558 18.0 0.116 E -129.4 169.3 NA NA NA
VAL B:518 B:558 19.0 0.123 E -130.6 170.5 18.0 0.116 0.007 A:Q9BYC5:0.006
 HOH
 3.409
 CG2
 O
6x5t 1 Q9BYC5 100.0 0.0 X-RAY
 2020-10-07 VAL A:518 A:558 19.0 0.123 E -125.1 164.1 19.0 0.123 0.0 HOH
 3.768
 CG2
 O
VAL B:518 B:558 18.0 0.116 E -125.2 164.9 18.0 0.116 0.0 HOH
 4.288
 O
 O
VAL C:518 C:558 19.0 0.123 E -124.4 164.4 NA NA NA
VAL D:518 D:558 17.0 0.11 E -125.5 164.8 NA NA NA
VAL E:518 E:558 16.0 0.103 E -126.8 165.1 NA NA NA
VAL F:518 F:558 17.0 0.11 E -126.1 165.0 NA NA NA
VAL G:518 G:558 16.0 0.103 E -125.3 164.2 NA NA NA
VAL H:518 H:558 19.0 0.123 E -124.8 165.0 NA NA NA
6x5u 1 Q9BYC5 100.0 0.0 X-RAY
 2020-10-07 VAL A:518 A:558 16.0 0.103 E -123.3 179.6 16.0 0.103 0.0 HOH
 7.118
 O
 O
VAL B:518 B:558 17.0 0.11 E -122.9 178.9 17.0 0.11 0.0 HOH
 7.741
 O
 O
VAL C:518 C:558 15.0 0.097 E -122.2 178.7 NA NA NA
VAL D:518 D:558 16.0 0.103 E -122.5 178.3 NA NA NA
VAL E:518 E:558 17.0 0.11 E -122.5 178.8 NA NA NA
VAL F:518 F:558 16.0 0.103 E -123.6 179.0 NA NA NA
VAL G:518 G:558 14.0 0.09 E -121.8 177.2 NA NA NA
VAL H:518 H:558 15.0 0.097 E -123.4 178.3 NA NA NA
2de0 1 Q9BYC5 100.0 0.0 X-RAY
 2006-12-26 VAL A:496 X:558 16.0 0.103 E -130.3 166.0 16.0 0.103 0.0 HOH
 5.252
 O
 O
6vlf 1 Q9WTS2 96.07 0.0 X-RAY
 2020-02-26 VAL A:526 A:558 21.0 0.135 E -124.9 164.3 21.0 0.135 0.0 HOH
 3.352
 O
 O
VAL B:526 B:558 19.0 0.123 E -120.7 165.2 19.0 0.123 0.0 EDO
HOH
 9.707
3.680
 N
CG2
 O1
O
6vlg 1 Q9WTS2 96.07 0.0 X-RAY
 2020-02-26 VAL A:526 A:558 19.0 0.123 E -129.8 164.2 NA NA NA
VAL B:526 B:558 18.0 0.116 E -122.8 162.0 NA NA NA
VAL C:526 C:558 18.0 0.116 E -123.7 158.6 18.0 0.116 0.0 HOH
 3.584
 CG2
 O
VAL D:526 D:558 18.0 0.116 E -129.2 160.4 NA NA NA
6vld 1 Q9BYC5 100.0 0.0 X-RAY
 2020-02-26 VAL A:454 A:558 17.0 0.11 E -132.6 158.6 17.0 0.11 0.0 HOH
 3.367
 CG2
 O
VAL B:454 B:558 16.0 0.103 E -132.7 161.8 NA NA NA
VAL C:454 G:558 17.0 0.11 E -133.8 162.3 NA NA NA
VAL D:454 H:558 17.0 0.11 E -132.8 159.8 16.0 0.103 0.007 A:Q9BYC5:0.006
 HOH
 3.590
 CG2
 O
6vle 1 Q9BYC5 100.0 0.0 X-RAY
 2020-02-26 VAL A:454 A:558 16.0 0.103 E -130.3 159.6 16.0 0.103 0.0 HOH
 3.659
 CG2
 O
VAL B:454 B:558 16.0 0.103 E -131.8 160.4 16.0 0.103 0.0 HOH
 3.624
 CG2
 O
6tkv 1 Q9BYC5 100.0 0.0 X-RAY
 2020-01-29 VAL A:452 A:558 19.0 0.123 E -130.9 162.1 NA NA NA
6x5s 1 Q9BYC5 100.0 0.0 X-RAY
 2020-10-07 VAL A:451 A:558 19.0 0.123 E -126.4 162.7 18.0 0.116 0.007 B:Q9BYC5:0.006
 HOH
 9.995
 C
 O
VAL B:451 B:558 18.0 0.116 E -125.1 164.9 NA NA NA
6tkv 2 Q9BYC5 96.79 0.0 X-RAY
 2020-01-29 VAL B:436 B:558 18.0 0.116 E -131.5 161.4 17.0 0.11 0.006 A:Q9BYC5:0.006
 GOL
GOL
HOH
 7.909
7.475
2.983
 CA
C
O
 O2
O2
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9byc5-f1 1 Q9BYC5 100.0 0.0 VAL A:558 A:558 17.0 0.11 E -126.4 161.5