Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr14 90499552 . A C CCDS9888.1:NM_001008744.1:c.1747Agt>Cgt_NP_001008744.1:p.583S>R Homo sapiens tyrosyl-DNA phosphodiesterase 1 (TDP1), transcript variant 1, mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1qzq 1 Q9NUW8 100.0 0.0 X-RAY
2004-05-11 SER A:458 A:583 115.0 1.0 T -60.1 -26.2 115.0 1.0 0.0 HOH
3.366
O
O
SER B:458 B:583 119.0 1.0 S -66.9 -29.5 119.0 1.0 0.0 HOH
7.491
N
O
6dhu 1 Q9NUW8 100.0 0.0 X-RAY
2019-05-29 SER A:436 A:583 112.0 0.974 T -63.2 -26.7 112.0 0.974 0.0 HOH
2.822
N
O
SER B:436 B:583 92.0 0.8 T -63.9 -22.1 NA NA NA
6die 1 Q9NUW8 100.0 0.0 X-RAY
2019-05-29 SER A:436 A:583 109.0 0.948 T -62.1 -27.7 109.0 0.948 0.0 HOH
2.948
N
O
SER B:436 B:583 91.0 0.791 T -63.7 -28.9 NA NA NA
6dih 1 Q9NUW8 100.0 0.0 X-RAY
2019-05-29 SER A:436 A:583 113.0 0.983 T -63.6 -27.0 113.0 0.983 0.0 HOH
2.846
N
O
SER B:436 B:583 114.0 0.991 T -63.9 -24.9 NA NA NA
6dim 1 Q9NUW8 100.0 0.0 X-RAY
2019-05-29 SER A:436 A:583 113.0 0.983 T -64.4 -27.2 113.0 0.983 0.0 HOH
2.834
N
O
SER B:436 B:583 110.0 0.957 T -66.5 -24.7 NA NA NA
6djd 1 Q9NUW8 100.0 0.0 X-RAY
2019-05-29 SER A:436 A:583 113.0 0.983 T -62.7 -27.6 113.0 0.983 0.0 HOH
2.809
N
O
SER B:436 B:583 110.0 0.957 T -63.1 -24.7 NA NA NA
6dje 1 Q9NUW8 100.0 0.0 X-RAY
2019-05-29 SER A:436 A:583 110.0 0.957 T -64.0 -25.8 110.0 0.957 0.0 HOH
2.919
N
O
SER B:436 B:583 89.0 0.774 T -63.5 -24.1 NA NA NA
6djf 1 Q9NUW8 100.0 0.0 X-RAY
2019-05-29 SER A:436 A:583 112.0 0.974 T -63.1 -27.0 112.0 0.974 0.0 HOH
2.857
N
O
SER B:436 B:583 90.0 0.783 T -62.9 -29.6 NA NA NA
6djg 1 Q9NUW8 100.0 0.0 X-RAY
2019-05-29 SER A:436 A:583 113.0 0.983 T -62.6 -27.0 113.0 0.983 0.0 HOH
2.708
N
O
SER B:436 B:583 89.0 0.774 T -62.4 -28.2 NA NA NA
6djh 1 Q9NUW8 100.0 0.0 X-RAY
2019-05-29 SER A:436 A:583 116.0 1.0 T -65.8 -24.7 116.0 1.0 0.0 HOH
2.825
N
O
SER B:436 B:583 126.0 1.0 T -61.1 -31.0 NA NA NA
6dji 1 Q9NUW8 100.0 0.0 X-RAY
2019-05-29 SER A:436 A:583 115.0 1.0 T -62.5 -25.8 115.0 1.0 0.0 HOH
2.885
N
O
SER B:436 B:583 96.0 0.835 T -62.0 -28.6 NA NA NA
6djj 1 Q9NUW8 100.0 0.0 X-RAY
2019-05-29 SER A:436 A:583 112.0 0.974 T -63.5 -27.4 112.0 0.974 0.0 HOH
2.929
N
O
SER B:436 B:583 112.0 0.974 T -66.0 -25.0 NA NA NA
6myz 1 Q9NUW8 100.0 0.0 X-RAY
2019-11-06 SER A:436 A:583 110.0 0.957 T -63.6 -26.3 110.0 0.957 0.0 HOH
3.245
N
O
SER B:436 B:583 87.0 0.757 T -61.8 -25.3 NA NA NA
6mz0 1 Q9NUW8 100.0 0.0 X-RAY
2019-11-06 SER A:436 A:583 106.0 0.922 T -60.0 -32.5 106.0 0.922 0.0 HOH
2.886
N
O
SER B:436 B:583 91.0 0.791 T -69.3 -24.3 NA NA NA
6n0d 1 Q9NUW8 100.0 0.0 X-RAY
2019-11-13 SER A:436 A:583 113.0 0.983 T -61.3 -28.1 113.0 0.983 0.0 HOH
2.896
N
O
SER B:436 B:583 115.0 1.0 T -62.9 -26.4 NA NA NA
6n0n 1 Q9NUW8 100.0 0.0 X-RAY
2019-11-13 SER A:436 A:583 97.0 0.843 T -59.7 -27.8 97.0 0.843 0.0 HOH
3.251
N
O
SER B:436 B:583 114.0 0.991 T -62.1 -26.8 NA NA NA
6n0o 1 Q9NUW8 100.0 0.0 X-RAY
2019-11-13 SER A:436 A:583 112.0 0.974 T -61.0 -29.1 112.0 0.974 0.0 HOH
2.837
N
O
SER B:436 B:583 86.0 0.748 T -61.1 -27.1 NA NA NA
6n0r 1 Q9NUW8 100.0 0.0 X-RAY
2019-11-13 SER A:436 A:583 112.0 0.974 T -65.8 -25.6 112.0 0.974 0.0 DMS
HOH
4.497
2.893
O
N
O
O
SER B:436 B:583 99.0 0.861 T -68.4 -24.2 NA NA NA
6n17 1 Q9NUW8 100.0 0.0 X-RAY
2019-07-03 SER A:436 A:583 115.0 1.0 T -63.0 -25.1 115.0 1.0 0.0 DMS
HOH
4.015
2.862
O
N
C1
O
SER B:436 B:583 116.0 1.0 T -64.0 -26.1 NA NA NA
6n19 1 Q9NUW8 100.0 0.0 X-RAY
2019-07-03 SER A:436 A:583 112.0 0.974 T -62.1 -27.3 112.0 0.974 0.0 HOH
2.898
N
O
SER B:436 B:583 115.0 1.0 T -62.7 -29.5 NA NA NA
6w4r 1 Q9NUW8 100.0 0.0 X-RAY
2021-03-17 SER A:436 A:583 105.0 0.913 T -66.8 -24.9 105.0 0.913 0.0 HOH
2.998
N
O
SER B:436 B:583 114.0 0.991 T -54.3 -32.9 NA NA NA
6w7j 1 Q9NUW8 100.0 0.0 X-RAY
2021-03-24 SER A:436 A:583 105.0 0.913 T -63.9 -24.9 105.0 0.913 0.0 HOH
2.547
O
O
SER B:436 B:583 92.0 0.8 T -62.9 -25.1 NA NA NA
6w7k 1 Q9NUW8 100.0 0.0 X-RAY
2021-03-24 SER A:436 A:583 113.0 0.983 T -61.7 -28.2 113.0 0.983 0.0 HOH
2.849
N
O
SER B:436 B:583 114.0 0.991 T -60.7 -27.7 NA NA NA
6w7l 1 Q9NUW8 100.0 0.0 X-RAY
2021-03-24 SER A:436 A:583 107.0 0.93 T -63.2 -27.3 107.0 0.93 0.0 HOH
2.948
N
O
SER B:436 B:583 107.0 0.93 T -60.3 -25.0 NA NA NA
6mj5 1 Q9NUW8 100.0 0.0 X-RAY
2019-07-03 SER A:435 A:583 106.0 0.922 T -65.0 -26.9 106.0 0.922 0.0 HOH
2.894
N
O
SER B:435 B:583 104.0 0.904 T -68.0 -25.6 NA NA NA
1jy1 1 Q9NUW8 98.92 0.0 X-RAY
2002-02-20 SER A:439 A:583 127.0 1.0 T -61.5 -30.4 127.0 1.0 0.0 HOH
2.788
N
O
1mu7 1 20127586 98.92 0.0 X-RAY
2003-01-07 SER A:460 A:583 104.0 0.904 T -66.9 -26.3 104.0 0.904 0.0 HOH
2.647
N
O
SER B:460 B:583 113.0 0.983 T -61.0 -28.3 NA NA NA
1mu9 1 20127586 98.92 0.0 X-RAY
2003-01-07 SER A:460 A:583 131.0 1.0 T -62.6 -30.0 131.0 1.0 0.0 HOH
5.505
N
O
SER B:460 B:583 129.0 1.0 T -65.3 -24.2 NA NA NA
1nop 2 20127586 98.92 0.0 X-RAY
2003-03-11 SER C:460 A:583 135.0 1.0 T -67.2 -22.0 135.0 1.0 0.0 HOH
3.590
O
O
SER D:460 B:583 129.0 1.0 T -61.1 -31.0 NA NA NA
1rff 2 Q9NUW8 98.92 0.0 X-RAY
2004-03-02 SER C:460 A:583 133.0 1.0 T -61.5 -26.9 133.0 1.0 0.0 HOH
3.265
O
O
SER D:460 B:583 135.0 1.0 T -56.4 -36.0 NA NA NA
1rfi 2 Q9NUW8 98.92 0.0 X-RAY
2004-03-02 SER C:460 A:583 127.0 1.0 T -74.8 -29.5 127.0 1.0 0.0 HOH
7.720
O
O
SER D:460 B:583 127.0 1.0 T -63.4 -29.7 NA NA NA
1rg1 2 Q9NUW8 98.92 0.0 X-RAY
2004-03-02 SER C:460 A:583 126.0 1.0 T -69.1 -32.7 126.0 1.0 0.0 HOH
7.999
N
O
SER D:460 B:583 131.0 1.0 T -72.2 -16.4 NA NA NA
1rg2 2 Q9NUW8 98.92 0.0 X-RAY
2004-03-02 SER C:460 A:583 132.0 1.0 T -63.8 -27.1 132.0 1.0 0.0 HOH
3.458
O
O
SER D:460 B:583 128.0 1.0 T -65.0 -23.4 NA NA NA
1rgt 2 Q9NUW8 98.92 0.0 X-RAY
2004-03-02 SER C:460 A:583 133.0 1.0 T -68.5 -27.3 133.0 1.0 0.0 HOH
7.758
N
O
SER D:460 B:583 126.0 1.0 T -58.2 -28.1 NA NA NA
1rgu 2 Q9NUW8 98.92 0.0 X-RAY
2004-03-02 SER C:460 A:583 127.0 1.0 T -71.8 -28.6 127.0 1.0 0.0 HOH
2.564
O
O
SER D:460 B:583 133.0 1.0 T -58.1 -33.2 NA NA NA
1rh0 2 Q9NUW8 98.92 0.0 X-RAY
2004-03-02 SER C:460 A:583 135.0 1.0 T -77.6 -26.9 135.0 1.0 0.0 HOH
3.733
O
O
SER D:460 B:583 134.0 1.0 S -70.6 -13.6 NA NA NA
5nw9 1 Q9NUW8 98.92 0.0 X-RAY
2018-01-10 SER A:460 A:583 137.0 1.0 T -82.0 -12.8 137.0 1.0 0.0 HOH
7.690
N
O
SER B:460 B:583 134.0 1.0 T -71.0 -26.6 NA NA NA
5nwa 1 Q9NUW8 98.92 0.0 X-RAY
2018-01-10 SER A:460 A:583 131.0 1.0 S -66.0 -39.5 131.0 1.0 0.0
SER C:460 B:583 130.0 1.0 S -56.9 -31.1 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9nuw8-f1 1 Q9NUW8 100.0 0.0 SER A:583 A:583 107.0 0.93 T -59.3 -28.0