Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr15 41763467 . A C CCDS32200.2:NM_015138.4:c.1123Atg>Ctg_NP_055953.3:p.375M>L Homo sapiens RTF1 homolog, Paf1/RNA polymerase II complex component (RTF1), mRNA.
pdb_id: 
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label_seq_id: 
label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6ted 17 Q92541 100.0 0.0 EM
 2020-07-22 MET Q:378 R:375 33.0 0.178 -74.2 127.4 33.0 0.178 0.0
3u1u 1 Q92541 100.0 2e-98 X-RAY
 2012-04-04 MSE A:30 A:375 101.0 0.546 S -108.0 160.4 101.0 0.546 0.0 SO4
SO4
UNX
UNX
HOH
 7.152
8.033
2.671
3.815
3.826
 N
N
CE
CE
N
 O2
O1
UNK
UNK
O
MSE B:30 B:375 69.0 0.373 S -69.4 148.2 69.0 0.373 0.0 UNX
HOH
 7.743
3.502
 CE
N
 UNK
O
4l1p 1 Q92541 97.78 6e-95 X-RAY
 2013-10-02 MET A:29 B:375 114.0 0.616 S -75.1 133.9 114.0 0.616 0.0 HOH
 2.665
 HG2
 O
MET B:29 A:375 62.0 0.335 S -75.5 145.9 NA NA NA
4l1u 1 Q92541 97.78 6e-95 X-RAY
 2013-10-02 MET A:29 A:375 41.0 0.222 S -84.2 139.5 NA NA NA
MET B:29 B:375 101.0 0.546 S -73.3 149.7 101.0 0.546 0.0 SO4
HOH
 7.444
8.681
 H
HE2
 O2
O
MET C:29 C:375 122.0 0.659 S -87.3 146.2 NA NA NA
MET D:29 D:375 45.0 0.243 S -71.7 154.1 NA NA NA
MET E:29 E:375 111.0 0.6 S -76.2 141.5 NA NA NA
MET F:29 F:375 75.0 0.405 S -85.9 137.6 NA NA NA
2bze 1 Q92541 96.4 4e-87 NMR
 2007-01-03 MET A:44 A:367 97.0 0.524 S -65.6 168.1 97.0 0.524 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q92541-f1 1 Q92541 100.0 0.0 MET A:375 A:375 20.0 0.108 -80.2 138.9