Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr15 41767809 . C A CCDS32200.2:NM_015138.4:c.1373gCg>gAg_NP_055953.3:p.458A>E Homo sapiens RTF1 homolog, Paf1/RNA polymerase II complex component (RTF1), mRNA.
pdb_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6ted 17 Q92541 100.0 0.0 EM
 2020-07-22 ALA Q:461 R:458 3.0 0.026 H -73.4 -26.3 3.0 0.026 0.0
3u1u 1 Q92541 100.0 2e-98 X-RAY
 2012-04-04 ALA A:113 A:458 24.0 0.209 H -68.0 -44.6 24.0 0.209 0.0 GOL
UNX
UNX
UNX
HOH
 6.858
9.749
9.497
9.781
2.952
 O
CB
O
O
O
 O3
UNK
UNK
UNK
O
ALA B:113 B:458 25.0 0.217 H -59.6 -38.9 25.0 0.217 0.0 HOH
 3.632
 N
 O
4l1p 1 Q92541 97.78 6e-95 X-RAY
 2013-10-02 ALA A:112 B:458 26.0 0.226 H -58.5 -42.8 26.0 0.226 0.0 HOH
 6.050
 HB3
 O
ALA B:112 A:458 25.0 0.217 H -63.1 -41.3 NA NA NA
4l1u 1 Q92541 97.78 6e-95 X-RAY
 2013-10-02 ALA A:112 A:458 25.0 0.217 H -60.8 -49.8 NA NA NA
ALA B:112 B:458 27.0 0.235 H -62.7 -37.0 27.0 0.235 0.0 SO4
HOH
 8.325
4.490
 HB1
HB2
 O1
O
ALA C:112 C:458 28.0 0.243 H -57.2 -48.6 NA NA NA
ALA D:112 D:458 28.0 0.243 H -61.3 -43.7 NA NA NA
ALA E:112 E:458 18.0 0.157 H -57.6 -39.2 NA NA NA
ALA F:112 F:458 26.0 0.226 H -71.1 -32.5 NA NA NA
2bze 1 Q92541 96.4 4e-87 NMR
 2007-01-03 ALA A:127 A:450 24.0 0.209 H -73.5 -45.2 24.0 0.209 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q92541-f1 1 Q92541 100.0 0.0 ALA A:458 A:458 22.0 0.191 H -68.1 -32.3