Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr15 41767916 . T A CCDS32200.2:NM_015138.4:c.1381Tct>Act_NP_055953.3:p.461S>T Homo sapiens RTF1 homolog, Paf1/RNA polymerase II complex component (RTF1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6ted 17 Q92541 100.0 0.0 EM
 2020-07-22 SER Q:464 R:461 84.0 0.73 H -79.4 -22.4 84.0 0.73 0.0
3u1u 1 Q92541 100.0 2e-98 X-RAY
 2012-04-04 SER A:116 A:461 110.0 0.957 H -52.3 -47.8 110.0 0.957 0.0 GOL
UNX
HOH
 4.937
6.577
3.593
 N
O
CA
 O2
UNK
O
SER B:116 B:461 114.0 0.991 H -63.8 -24.9 114.0 0.991 0.0 HOH
 6.525
 OG
 O
4l1p 1 Q92541 97.78 6e-95 X-RAY
 2013-10-02 SER A:115 B:461 110.0 0.957 H -56.5 -40.3 110.0 0.957 0.0 HOH
 9.990
 H
 O
SER B:115 A:461 98.0 0.852 H -55.3 -52.9 NA NA NA
4l1u 1 Q92541 97.78 6e-95 X-RAY
 2013-10-02 SER A:115 A:461 95.0 0.826 H -61.0 -32.6 NA NA NA
SER B:115 B:461 112.0 0.974 H -51.3 -34.5 112.0 0.974 0.0 HOH
 5.700
 N
 O
SER C:115 C:461 108.0 0.939 H -64.0 -27.1 NA NA NA
SER D:115 D:461 102.0 0.887 H -68.0 -19.8 NA NA NA
SER E:115 E:461 95.0 0.826 H -63.5 -26.6 NA NA NA
SER F:115 F:461 106.0 0.922 H -55.6 -39.0 NA NA NA
2bze 1 Q92541 96.4 4e-87 NMR
 2007-01-03 SER A:130 A:453 106.0 0.922 H -71.9 -16.6 106.0 0.922 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q92541-f1 1 Q92541 100.0 0.0 SER A:461 A:461 104.0 0.904 H -64.0 -23.7