Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr15 41767959 . A C CCDS32200.2:NM_015138.4:c.1424aAg>aCg_NP_055953.3:p.475K>T Homo sapiens RTF1 homolog, Paf1/RNA polymerase II complex component (RTF1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6ted 17 Q92541 100.0 0.0 EM
 2020-07-22 LYS Q:478 R:475 21.0 0.105 H -93.3 -31.2 21.0 0.105 0.0
3u1u 1 Q92541 100.0 2e-98 X-RAY
 2012-04-04 LYS A:130 A:475 40.0 0.2 H -65.1 -47.2 40.0 0.2 0.0 UNX
UNX
HOH
 4.641
9.979
2.760
 CB
NZ
NZ
 UNK
UNK
O
LYS B:130 B:475 37.0 0.185 H -66.2 -50.5 37.0 0.185 0.0 UNX
HOH
 4.398
2.756
 CB
NZ
 UNK
O
4l1p 1 Q92541 97.78 6e-95 X-RAY
 2013-10-02 LYS A:129 B:475 37.0 0.185 H -56.4 -51.3 37.0 0.185 0.0 GOL
GOL
HOH
 3.832
9.692
2.577
 HB2
O
HZ3
 O1
H32
O
LYS B:129 A:475 45.0 0.225 H -62.0 -46.3 NA NA NA
4l1u 1 Q92541 97.78 6e-95 X-RAY
 2013-10-02 LYS A:129 A:475 34.0 0.17 H -57.3 -46.9 NA NA NA
LYS B:129 B:475 43.0 0.215 H -61.4 -53.9 43.0 0.215 0.0 HOH
 3.041
 HZ3
 O
LYS C:129 C:475 42.0 0.21 H -60.7 -54.6 NA NA NA
LYS D:129 D:475 40.0 0.2 H -61.7 -42.5 NA NA NA
LYS E:129 E:475 50.0 0.25 H -70.0 -37.7 NA NA NA
LYS F:129 F:475 49.0 0.245 H -62.6 -43.0 NA NA NA
2bze 1 Q92541 96.4 4e-87 NMR
 2007-01-03 LYS A:144 A:467 43.0 0.215 H -68.2 -52.5 43.0 0.215 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q92541-f1 1 Q92541 100.0 0.0 LYS A:475 A:475 35.0 0.175 H -71.0 -39.0