Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr15 | 45660438 | . | G | A | CCDS10122.1:NM_001482.2:c.505Cga>Tga_NP_001473.1:p.169R>* | Homo sapiens glycine amidinotransferase (GATM), transcript variant 1, mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 1jdw | 1 | P50440 | 100.0 | 0.0 |
X-RAY |
1998-01-28 | ARG | A:169 | A:169 | 8.0 | 0.036 | H | -62.3 | -26.4 | 8.0 | 0.036 | 0.0 |
BME HOH |
4.599 1.388 |
CB HH11 |
S2 H2 |
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| 2jdw | 1 | P50440 | 100.0 | 0.0 |
X-RAY |
1998-01-28 | ARG | A:169 | A:169 | 11.0 | 0.049 | H | -63.9 | -25.9 | 11.0 | 0.049 | 0.0 |
HOH |
2.088 |
HH11 |
O |
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| 3jdw | 1 | P50440 | 100.0 | 0.0 |
X-RAY |
1998-01-28 | ARG | A:169 | A:169 | 11.0 | 0.049 | H | -63.6 | -25.4 | 11.0 | 0.049 | 0.0 |
ORN HOH |
5.608 1.681 |
CG HH11 |
HE3 H2 |
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| 4jdw | 1 | P50440 | 99.76 | 0.0 |
X-RAY |
1998-01-28 | ARG | A:169 | A:169 | 11.0 | 0.049 | H | -60.4 | -28.5 | 11.0 | 0.049 | 0.0 |
ARG HOH |
3.368 2.325 |
CB HH11 |
HH22 H2 |
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| 1jdx | 1 | P50440 | 100.0 | 0.0 |
X-RAY |
1999-02-09 | ARG | A:132 | A:169 | 13.0 | 0.058 | H | -63.3 | -26.0 | 13.0 | 0.058 | 0.0 |
NVA HOH |
7.813 1.752 |
CG HH11 |
CD H1 |
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| 5jdw | 1 | P50440 | 100.0 | 0.0 |
X-RAY |
1999-02-09 | ARG | A:132 | A:169 | 14.0 | 0.062 | H | -62.8 | -25.6 | 14.0 | 0.062 | 0.0 |
GLY HOH |
8.276 1.231 |
CG HH11 |
CA H2 |
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| 6jdw | 1 | P50440 | 100.0 | 0.0 |
X-RAY |
1999-02-09 | ARG | A:132 | A:169 | 13.0 | 0.058 | H | -65.9 | -22.6 | 13.0 | 0.058 | 0.0 |
ABU HOH |
7.254 1.286 |
CB HH11 |
HN3 H2 |
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| 7jdw | 1 | P50440 | 100.0 | 0.0 |
X-RAY |
1999-02-09 | ARG | A:132 | A:169 | 13.0 | 0.058 | H | -63.7 | -24.8 | 13.0 | 0.058 | 0.0 |
DAV HOH |
5.340 1.707 |
CB O |
HT3 H2 |
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| 8jdw | 1 | P50440 | 100.0 | 0.0 |
X-RAY |
1999-02-09 | ARG | A:132 | A:169 | 12.0 | 0.053 | H | -62.0 | -27.5 | 12.0 | 0.053 | 0.0 |
ALA HOH |
9.601 1.542 |
CG HH11 |
CB H1 |
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| 9jdw | 1 | P50440 | 100.0 | 0.0 |
X-RAY |
1999-02-09 | ARG | A:132 | A:169 | 12.0 | 0.053 | H | -65.5 | -22.0 | 12.0 | 0.053 | 0.0 |
ABA HOH |
8.923 1.917 |
CG HH22 |
CG H1 |
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| 2jdx | 1 | P50440 | 99.74 | 0.0 |
X-RAY |
1999-02-09 | ARG | A:132 | A:169 | 11.0 | 0.049 | H | -64.3 | -26.7 | 11.0 | 0.049 | 0.0 |
HOH |
2.247 |
HH11 |
O |
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AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
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| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p50440-f1 | 1 | P50440 | 100.0 | 0.0 | ARG | A:169 | A:169 | 6.0 | 0.027 | H | -60.6 | -31.6 | |