Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr15 66170221 . A C CCDS10212.1:NM_004663.4:c.358Atg>Ctg_NP_004654.1:p.120M>L Homo sapiens RAB11A, member RAS oncogene family (RAB11A), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5fbl 2 P62491 100.0 5e-164 X-RAY
 2016-12-28 MET B:125 B:120 2.0 0.011 E -115.2 128.1 2.0 0.011 0.0
5fbq 2 P62491 100.0 5e-164 X-RAY
 2016-12-28 MET B:125 B:120 3.0 0.016 E -115.0 128.0 3.0 0.016 0.0
5fbr 2 P62491 99.54 1e-162 X-RAY
 2016-12-28 MET B:125 B:120 1.0 0.005 E -115.2 128.1 1.0 0.005 0.0
5fbv 2 P62491 99.54 1e-162 X-RAY
 2016-12-28 MET B:125 B:120 0.0 0.0 E -114.9 128.1 0.0 0.0 0.0
5fbw 2 P62491 99.54 1e-162 X-RAY
 2016-12-28 MET B:125 B:120 1.0 0.005 E -117.8 125.1 1.0 0.005 0.0
4d0l 2 P62491 99.54 2e-162 X-RAY
 2014-05-28 MET B:123 B:120 2.0 0.011 E -115.4 128.2 2.0 0.011 0.0
MET D:123 D:120 3.0 0.016 E -116.1 127.9 NA NA NA
MET F:123 F:120 3.0 0.016 E -116.0 125.7 NA NA NA
4d0m 2 P62491 99.54 2e-162 X-RAY
 2014-05-28 MET B:123 B:120 2.0 0.011 E -116.2 130.0 2.0 0.011 0.0
MET D:123 D:120 1.0 0.005 E -115.3 130.5 1.0 0.005 0.0
MET H:123 H:120 2.0 0.011 E -115.7 129.9 NA NA NA
MET J:123 J:120 2.0 0.011 E -115.2 130.3 NA NA NA
MET N:123 N:120 2.0 0.011 E -115.4 130.0 NA NA NA
MET P:123 P:120 1.0 0.005 E -115.4 129.9 1.0 0.005 0.0
MET R:123 R:120 1.0 0.005 E -115.4 129.7 NA NA NA
MET T:123 T:120 2.0 0.011 E -115.2 129.9 2.0 0.011 0.0
MET X:123 X:120 2.0 0.011 E -115.0 129.6 NA NA NA
MET Z:123 Z:120 2.0 0.011 E -115.1 130.1 NA NA NA
MET DA:123 d:120 2.0 0.011 E -115.0 129.9 NA NA NA
MET HA:123 h:120 2.0 0.011 E -114.8 129.7 NA NA NA
5c46 2 P62491 99.54 2e-162 X-RAY
 2016-01-20 MET B:123 F:120 2.0 0.011 E -108.7 113.7 2.0 0.011 0.0
5c4g 1 P62491 99.54 2e-162 X-RAY
 2016-01-20 MET A:123 B:120 2.0 0.011 E -110.3 109.6 2.0 0.011 0.0
5euq 1 P62491 99.54 2e-162 X-RAY
 2016-02-24 MET A:123 B:120 1.0 0.005 E -121.7 117.1 1.0 0.005 0.0
6djl 1 P62491 99.54 2e-162 X-RAY
 2018-09-26 MET A:123 A:120 2.0 0.011 E -132.7 134.2 2.0 0.011 0.0
MET F:123 F:120 9.0 0.049 E -131.1 134.7 NA NA NA
MET G:123 G:120 5.0 0.027 E -135.1 134.4 NA NA NA
MET H:123 H:120 9.0 0.049 E -128.3 132.2 NA NA NA
4ojk 1 Q15907 92.93 8e-135 X-RAY
 2014-08-06 MET A:115 A:120 4.0 0.022 E -119.4 129.1 4.0 0.022 0.0 HOH
 5.090
 N
 O
MET B:115 B:120 3.0 0.016 E -125.9 124.3 NA NA NA
4uj4 1 P62491 98.92 3e-134 X-RAY
 2015-08-12 MET A:119 A:120 1.0 0.005 E -116.9 133.5 NA NA NA
MET D:119 D:120 2.0 0.011 E -116.1 133.0 2.0 0.011 0.0
MET G:119 G:120 1.0 0.005 E -116.6 133.1 1.0 0.005 0.0
MET J:119 J:120 2.0 0.011 E -114.3 133.7 NA NA NA
2f9l 1 Q15907 92.42 8e-134 X-RAY
 2006-04-04 MET A:114 A:120 2.0 0.011 E -110.6 123.1 2.0 0.011 0.0 HOH
 4.595
 SD
 O
2f9m 1 Q15907 92.42 8e-134 X-RAY
 2006-04-04 MET A:114 A:120 2.0 0.011 E -113.7 119.6 2.0 0.011 0.0 HOH
 3.378
 CE
 O
4uj3 1 P62491 98.38 1e-133 X-RAY
 2015-08-12 MET A:121 A:120 1.0 0.005 E -116.5 133.3 1.0 0.005 0.0 HOH
 9.753
 O
 O
MET D:121 D:120 2.0 0.011 E -115.9 133.0 NA NA NA
MET G:121 G:120 1.0 0.005 E -116.2 133.0 NA NA NA
MET J:121 J:120 1.0 0.005 E -114.6 133.3 NA NA NA
MET M:121 M:120 2.0 0.011 E -115.9 133.4 NA NA NA
MET P:121 P:120 0.0 0.0 E -115.8 131.8 NA NA NA
MET S:121 S:120 1.0 0.005 E -115.9 135.7 NA NA NA
MET V:121 V:120 2.0 0.011 E -115.9 131.8 NA NA NA
4uj5 1 P62491 97.84 2e-132 X-RAY
 2015-08-12 MET A:119 A:120 2.0 0.011 E -117.3 135.9 2.0 0.011 0.0 HOH
 8.176
 SD
 O
MET B:119 B:120 5.0 0.027 E -115.5 131.3 NA NA NA
4lwz 1 P62491 100.0 1e-129 X-RAY
 2013-11-20 MET A:120 A:120 3.0 0.016 E -128.3 115.0 3.0 0.016 0.0 HOH
 7.320
 CE
 O
MET C:120 C:120 1.0 0.005 E -105.1 123.2 NA NA NA
4lx0 1 P62491 100.0 1e-129 X-RAY
 2013-11-20 MET A:120 A:120 3.0 0.016 E -120.6 124.0 3.0 0.016 0.0 HOH
 3.871
 CE
 O
MET C:120 C:120 2.0 0.011 E -111.6 124.5 NA NA NA
5jcz 1 P62491 100.0 1e-129 X-RAY
 2016-09-28 MET A:122 A:120 3.0 0.016 E -114.3 125.2 3.0 0.016 0.0 ACT
HOH
 8.598
3.515
 SD
CE
 O
O
MET D:122 D:120 3.0 0.016 E -118.4 124.4 NA NA NA
MET F:122 I:120 5.0 0.027 E -122.6 121.5 NA NA NA
4c4p 1 P62491 100.0 6e-127 X-RAY
 2013-09-18 MET A:120 A:120 4.0 0.022 E -121.3 111.6 4.0 0.022 0.0 HOH
 4.980
 HE1
 O
6ixv 2 P62491 100.0 7e-127 X-RAY
 2019-03-20 MET E:122 E:120 19.0 0.103 E -123.4 118.9 19.0 0.103 0.0
MET F:122 F:120 24.0 0.13 E -132.9 120.9 NA NA NA
MET G:122 G:120 10.0 0.054 E -140.2 113.8 NA NA NA
MET H:122 H:120 12.0 0.065 E -131.3 110.0 NA NA NA
1oiv 1 P24410 100.0 3e-126 X-RAY
 2004-01-08 MET A:138 A:120 3.0 0.016 E -123.7 124.9 3.0 0.016 0.0 HOH
 4.843
 N
 O
MET B:138 B:120 2.0 0.011 E -129.8 127.3 2.0 0.011 0.0 HOH
 4.552
 CA
 O
2gzd 1 P62491 99.42 1e-125 X-RAY
 2006-08-15 MSE A:120 A:120 2.0 0.011 E -121.1 123.1 2.0 0.011 0.0 HOH
 7.279
 CE
 O
MSE B:120 B:120 2.0 0.011 E -127.6 115.9 2.0 0.011 0.0 HOH
 9.419
 N
 O
2gzh 1 P62491 99.42 1e-125 X-RAY
 2006-08-15 MSE A:120 A:120 5.0 0.027 E -109.0 133.6 5.0 0.027 0.0 PO4
HOH
 6.642
5.070
 CE
CE
 O3
O
1oiw 1 P24410 99.42 6e-125 X-RAY
 2004-01-08 MET A:138 A:120 3.0 0.016 E -114.0 120.1 3.0 0.016 0.0 HOH
 5.695
 CE
 O
1oix 1 P24410 99.42 6e-125 X-RAY
 2005-01-25 MET A:138 A:120 4.0 0.022 E -104.5 119.4 4.0 0.022 0.0 HOH
 5.585
 SD
 O
2hv8 1 P62491 99.41 8e-123 X-RAY
 2006-11-21 MET A:117 A:120 3.0 0.016 E -116.7 126.2 3.0 0.016 0.0 HOH
 4.073
 CE
 O
MET C:117 B:120 3.0 0.016 E -113.5 121.1 NA NA NA
MET E:117 C:120 3.0 0.016 E -114.1 123.7 NA NA NA
6iy1 3 P62491 100.0 1e-122 X-RAY
 2019-12-18 MET F:115 F:120 1.0 0.005 E -116.0 132.4 NA NA NA
1yzk 1 P62491 100.0 5e-122 X-RAY
 2005-07-26 MET A:129 A:120 2.0 0.011 E -113.2 116.2 2.0 0.011 0.0 HOH
 3.915
 CE
 O
6iy1 2 P62491 100.0 1e-121 X-RAY
 2019-12-18 MET D:114 D:120 3.0 0.016 E -124.9 124.3 NA NA NA
5ez5 1 P62491 99.4 1e-121 X-RAY
 2016-12-07 MET A:113 A:120 3.0 0.016 E -104.2 126.3 3.0 0.016 0.0
MET B:113 B:120 4.0 0.022 E -108.2 123.6 4.0 0.022 0.0
2d7c 1 P62491 99.4 1e-120 X-RAY
 2006-09-26 MSE A:114 A:120 3.0 0.016 E -120.7 124.7 3.0 0.016 0.0 HOH
 4.408
 CE
 O
MSE B:114 B:120 3.0 0.016 E -121.1 124.1 NA NA NA
6iy1 1 P62491 100.0 3e-120 X-RAY
 2019-12-18 MET A:112 A:120 3.0 0.016 E -118.5 123.4 3.0 0.016 0.0 HOH
 5.575
 SD
 O
MET B:112 B:120 5.0 0.027 E -116.5 126.2 NA NA NA
MET C:112 C:120 2.0 0.011 E -114.1 126.0 NA NA NA
MET E:112 E:120 0.0 0.0 E -119.4 134.3 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p62491-f1 1 P62491 100.0 3e-164 MET A:120 A:120 3.0 0.016 E -117.3 126.5
af-q15907-f1 1 Q15907 91.28 6e-146 MET A:120 A:120 4.0 0.022 E -113.3 122.2