Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr15 66172039 . C A CCDS10212.1:NM_004663.4:c.461tCg>tAg_NP_004654.1:p.154S>* Homo sapiens RAB11A, member RAS oncogene family (RAB11A), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5fbl 2 P62491 100.0 5e-164 X-RAY
 2016-12-28 SER B:159 B:154 0.0 0.0 B -127.8 109.4 0.0 0.0 0.0 GSP
 3.927
 C
 O6
5fbq 2 P62491 100.0 5e-164 X-RAY
 2016-12-28 SER B:159 B:154 0.0 0.0 -127.9 109.8 0.0 0.0 0.0 GDP
 3.427
 C
 O6
5fbr 2 P62491 99.54 1e-162 X-RAY
 2016-12-28 SER B:159 B:154 0.0 0.0 -127.8 109.6 0.0 0.0 0.0 GSP
 3.583
 OG
 HN1
5fbv 2 P62491 99.54 1e-162 X-RAY
 2016-12-28 SER B:159 B:154 0.0 0.0 -127.8 110.1 0.0 0.0 0.0 GSP
 3.648
 OG
 HN1
5fbw 2 P62491 99.54 1e-162 X-RAY
 2016-12-28 SER B:159 B:154 0.0 0.0 B -126.9 110.7 0.0 0.0 0.0 GSP
 3.273
 OG
 HN1
4d0l 2 P62491 99.54 2e-162 X-RAY
 2014-05-28 SER B:157 B:154 0.0 0.0 -128.6 108.6 0.0 0.0 0.0 GSP
 3.561
 CA
 O6
SER D:157 D:154 0.0 0.0 -127.8 108.7 NA NA NA
SER F:157 F:154 0.0 0.0 -127.3 108.4 NA NA NA
4d0m 2 P62491 99.54 2e-162 X-RAY
 2014-05-28 SER B:157 B:154 0.0 0.0 -129.4 108.6 0.0 0.0 0.0 GSP
 3.424
 CA
 O6
SER D:157 D:154 0.0 0.0 -129.5 109.4 0.0 0.0 0.0 GSP
 3.413
 CA
 O6
SER H:157 H:154 0.0 0.0 -129.3 108.9 NA NA NA
SER J:157 J:154 0.0 0.0 -129.0 109.9 NA NA NA
SER N:157 N:154 0.0 0.0 -130.1 109.4 NA NA NA
SER P:157 P:154 0.0 0.0 -129.6 109.4 0.0 0.0 0.0 GSP
 3.658
 CA
 O6
SER R:157 R:154 0.0 0.0 -129.0 109.4 NA NA NA
SER T:157 T:154 0.0 0.0 -129.0 109.3 0.0 0.0 0.0 GSP
 3.384
 CA
 O6
SER X:157 X:154 0.0 0.0 -128.8 110.1 NA NA NA
SER Z:157 Z:154 0.0 0.0 -129.2 109.6 NA NA NA
SER DA:157 d:154 0.0 0.0 -129.3 109.9 NA NA NA
SER HA:157 h:154 0.0 0.0 -128.9 110.1 NA NA NA
5c46 2 P62491 99.54 2e-162 X-RAY
 2016-01-20 SER B:157 F:154 0.0 0.0 B -153.9 106.9 0.0 0.0 0.0 GSP
 3.344
 C
 O6
5c4g 1 P62491 99.54 2e-162 X-RAY
 2016-01-20 SER A:157 B:154 0.0 0.0 B -158.9 103.7 0.0 0.0 0.0 GDP
 2.911
 OG
 O6
5euq 1 P62491 99.54 2e-162 X-RAY
 2016-02-24 SER A:157 B:154 0.0 0.0 B -153.9 116.7 0.0 0.0 0.0 GDP
 3.222
 OG
 O6
6djl 1 P62491 99.54 2e-162 X-RAY
 2018-09-26 SER A:157 A:154 57.0 0.496 -95.9 -163.1 57.0 0.496 0.0
SER F:157 F:154 29.0 0.252 -116.2 -150.4 NA NA NA
SER G:157 G:154 56.0 0.487 -105.3 -170.5 NA NA NA
SER H:157 H:154 46.0 0.4 -111.0 -174.8 NA NA NA
4ojk 1 Q15907 92.93 8e-135 X-RAY
 2014-08-06 SER A:149 A:154 0.0 0.0 B -141.8 100.7 0.0 0.0 0.0 GDP
HOH
 3.399
3.635
 CA
CB
 O6
O
SER B:149 B:154 0.0 0.0 B -141.8 102.3 NA NA NA
4uj4 1 P62491 98.92 3e-134 X-RAY
 2015-08-12 SER A:153 A:154 0.0 0.0 -130.0 113.8 NA NA NA
SER D:153 D:154 0.0 0.0 -127.9 112.9 0.0 0.0 0.0 GNP
 3.153
 OG
 O6
SER G:153 G:154 0.0 0.0 -129.3 111.9 0.0 0.0 0.0 GNP
 3.435
 CA
 O6
SER J:153 J:154 0.0 0.0 -127.6 110.3 NA NA NA
2f9l 1 Q15907 92.42 8e-134 X-RAY
 2006-04-04 SER A:148 A:154 0.0 0.0 -127.5 106.6 0.0 0.0 0.0 GDP
HOH
 3.389
3.655
 CA
CB
 O6
O
2f9m 1 Q15907 92.42 8e-134 X-RAY
 2006-04-04 SER A:148 A:154 0.0 0.0 -131.8 106.6 0.0 0.0 0.0 GNP
HOH
 3.426
3.790
 CA
CB
 O6
O
4uj3 1 P62491 98.38 1e-133 X-RAY
 2015-08-12 SER A:155 A:154 0.0 0.0 -129.9 113.6 0.0 0.0 0.0 GNP
HOH
 3.529
6.403
 C
OG
 O6
O
SER D:155 D:154 0.0 0.0 -128.2 113.1 NA NA NA
SER G:155 G:154 0.0 0.0 -129.5 112.0 NA NA NA
SER J:155 J:154 0.0 0.0 -127.6 110.4 NA NA NA
SER M:155 M:154 0.0 0.0 -128.7 112.5 NA NA NA
SER P:155 P:154 0.0 0.0 -129.4 113.3 NA NA NA
SER S:155 S:154 0.0 0.0 -129.4 112.1 NA NA NA
SER V:155 V:154 0.0 0.0 -127.8 112.4 NA NA NA
4uj5 1 P62491 97.84 2e-132 X-RAY
 2015-08-12 SER A:153 A:154 0.0 0.0 -130.8 106.4 0.0 0.0 0.0 GNP
HOH
 3.487
4.797
 CA
CB
 O6
O
SER B:153 B:154 0.0 0.0 -131.5 106.5 NA NA NA
4lwz 1 P62491 100.0 1e-129 X-RAY
 2013-11-20 SER A:154 A:154 0.0 0.0 -128.4 111.5 0.0 0.0 0.0 GDP
HOH
 3.334
6.592
 OG
OG
 O6
O
SER C:154 C:154 0.0 0.0 -140.0 103.2 NA NA NA
4lx0 1 P62491 100.0 1e-129 X-RAY
 2013-11-20 SER A:154 A:154 0.0 0.0 -134.9 105.6 0.0 0.0 0.0 GDP
HOH
 3.458
3.911
 CA
CB
 O6
O
SER C:154 C:154 0.0 0.0 -134.9 108.3 NA NA NA
5jcz 1 P62491 100.0 1e-129 X-RAY
 2016-09-28 SER A:156 A:154 0.0 0.0 -136.1 105.0 0.0 0.0 0.0 GDP
ACT
HOH
 3.473
8.460
3.845
 C
N
CB
 O6
O
O
SER D:156 D:154 0.0 0.0 -139.8 103.3 NA NA NA
SER F:156 I:154 0.0 0.0 -136.4 105.1 NA NA NA
4c4p 1 P62491 100.0 6e-127 X-RAY
 2013-09-18 SER A:154 A:154 0.0 0.0 -140.9 108.7 0.0 0.0 0.0 GNP
HOH
 2.712
3.468
 HA
HB2
 O6
O
6ixv 2 P62491 100.0 7e-127 X-RAY
 2019-03-20 SER E:156 E:154 29.0 0.252 E -120.3 176.7 29.0 0.252 0.0
SER F:156 F:154 60.0 0.522 -107.5 -170.6 NA NA NA
SER G:156 G:154 40.0 0.348 -136.5 -165.7 NA NA NA
SER H:156 H:154 30.0 0.261 -126.9 179.9 NA NA NA
1oiv 1 P24410 100.0 3e-126 X-RAY
 2004-01-08 SER A:172 A:154 0.0 0.0 -143.6 99.0 0.0 0.0 0.0 GDP
HOH
 3.341
3.781
 CA
CB
 O6
O
SER B:172 B:154 0.0 0.0 -142.9 102.7 0.0 0.0 0.0 GDP
HOH
 3.364
3.850
 CA
CB
 O6
O
2gzd 1 P62491 99.42 1e-125 X-RAY
 2006-08-15 SER A:154 A:154 0.0 0.0 -134.5 110.5 0.0 0.0 0.0 GTP
HOH
 3.448
4.101
 CA
CB
 O6
O
SER B:154 B:154 0.0 0.0 -136.5 107.3 0.0 0.0 0.0 GTP
HOH
 3.535
6.141
 CA
O
 O6
O
2gzh 1 P62491 99.42 1e-125 X-RAY
 2006-08-15 SER A:154 A:154 0.0 0.0 -140.0 110.8 0.0 0.0 0.0 GTP
HOH
 3.429
4.109
 CA
CB
 O6
O
1oiw 1 P24410 99.42 6e-125 X-RAY
 2004-01-08 SER A:172 A:154 0.0 0.0 -149.6 105.5 0.0 0.0 0.0 GSP
HOH
 3.305
3.751
 CA
CB
 O6
O
1oix 1 P24410 99.42 6e-125 X-RAY
 2005-01-25 SER A:172 A:154 0.0 0.0 -138.4 107.2 0.0 0.0 0.0 GDP
HOH
 3.380
4.192
 CA
N
 O6
O
2hv8 1 P62491 99.41 8e-123 X-RAY
 2006-11-21 SER A:151 A:154 0.0 0.0 -134.4 110.2 0.0 0.0 0.0 GTP
HOH
 3.537
4.272
 CA
N
 O6
O
SER C:151 B:154 0.0 0.0 -134.1 113.7 NA NA NA
SER E:151 C:154 0.0 0.0 -131.5 109.3 NA NA NA
6iy1 3 P62491 100.0 1e-122 X-RAY
 2019-12-18 SER F:149 F:154 0.0 0.0 -130.7 110.0 NA NA NA
1yzk 1 P62491 100.0 5e-122 X-RAY
 2005-07-26 SER A:163 A:154 0.0 0.0 -138.3 106.1 0.0 0.0 0.0 GNP
HOH
 3.422
3.852
 CA
CB
 O6
O
6iy1 2 P62491 100.0 1e-121 X-RAY
 2019-12-18 SER D:148 D:154 0.0 0.0 -134.7 109.1 NA NA NA
5ez5 1 P62491 99.4 1e-121 X-RAY
 2016-12-07 SER A:147 A:154 0.0 0.0 B -138.5 111.8 0.0 0.0 0.0 GTP
 3.447
 C
 O6
SER B:147 B:154 0.0 0.0 -142.5 110.8 0.0 0.0 0.0 GTP
 3.534
 C
 O6
2d7c 1 P62491 99.4 1e-120 X-RAY
 2006-09-26 SER A:148 A:154 0.0 0.0 -144.5 102.5 0.0 0.0 0.0 GTP
HOH
 3.421
3.830
 CA
CB
 O6
O
SER B:148 B:154 0.0 0.0 -146.5 105.4 NA NA NA
6iy1 1 P62491 100.0 3e-120 X-RAY
 2019-12-18 SER A:146 A:154 0.0 0.0 -131.0 113.2 0.0 0.0 0.0 GDP
HOH
 3.426
3.783
 C
CB
 O6
O
SER B:146 B:154 0.0 0.0 -135.9 109.1 NA NA NA
SER C:146 C:154 0.0 0.0 B -126.4 107.8 NA NA NA
SER E:146 E:154 0.0 0.0 -131.0 113.9 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p62491-f1 1 P62491 100.0 3e-164 SER A:154 A:154 0.0 0.0 -127.1 111.0
af-q15907-f1 1 Q15907 91.28 6e-146 SER A:154 A:154 0.0 0.0 -132.1 116.9