Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr16 12059204 . G A CCDS10552.1:NM_001192.2:c.23tGc>tAc_NP_001183.2:p.8C>Y Homo sapiens TNF receptor superfamily member 17 (TNFRSF17), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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label_comp_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4zfo 1 Q02223 100.0 3e-34 X-RAY
 2015-05-20 CYS A:8 F:8 40.0 0.296 -117.5 152.4 40.0 0.296 0.0 HOH
 3.605
 CA
 O
CYS F:8 K:8 40.0 0.296 -124.7 171.7 NA NA NA
2kn1 1 Q02223 100.0 5e-30 NMR
 2011-02-23 CYS A:7 A:7 51.0 0.378 -112.2 144.2 51.0 0.378 0.0
1xu2 2 Q02223 100.0 8e-29 X-RAY
 2004-11-09 CYS D:4 R:8 97.0 0.719 360.0 157.0 97.0 0.719 0.0
CYS E:4 S:8 30.0 0.222 -128.6 -177.0 30.0 0.222 0.0
CYS F:4 T:8 102.0 0.756 360.0 165.2 102.0 0.756 0.0
6j7w 2 Q02223 100.0 1e-22 X-RAY
 2019-02-06 CYS B:3 C:7 60.0 0.444 -129.2 174.7 60.0 0.444 0.0 HOH
 5.428
 O
 O
CYS D:3 D:7 37.0 0.274 -94.9 154.4 NA NA NA
1oqd 2 Q02223 100.0 2e-22 X-RAY
 2003-05-13 CYS K:1 K:1 101.0 0.748 360.0 178.9 101.0 0.748 0.0
CYS L:1 L:1 101.0 0.748 360.0 178.3 101.0 0.748 0.0
CYS M:1 M:1 101.0 0.748 360.0 178.1 101.0 0.748 0.0
CYS N:1 N:1 119.0 0.881 360.0 -133.7 119.0 0.881 0.0
CYS O:1 O:1 100.0 0.741 360.0 178.3 100.0 0.741 0.0
CYS P:1 P:1 101.0 0.748 360.0 178.9 101.0 0.748 0.0
CYS Q:1 Q:1 101.0 0.748 360.0 179.0 101.0 0.748 0.0
CYS R:1 R:1 101.0 0.748 360.0 178.6 101.0 0.748 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q02223-f1 1 Q02223 100.0 1e-136 CYS A:8 A:8 34.0 0.252 -61.2 156.0