Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr16 12059249 . C A CCDS10552.1:NM_001192.2:c.68cCt>cAt_NP_001183.2:p.23P>H Homo sapiens TNF receptor superfamily member 17 (TNFRSF17), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4zfo 1 Q02223 100.0 3e-34 X-RAY
2015-05-20 PRO A:23 F:23 54.0 0.372 E -63.5 131.2 33.0 0.228 0.144 E:None:0.145
HOH
3.459
CG
O
PRO F:23 K:23 65.0 0.448 E -64.3 135.8 NA NA NA
2kn1 1 Q02223 100.0 5e-30 NMR
2011-02-23 PRO A:22 A:22 48.0 0.331 E -79.9 147.8 48.0 0.331 0.0
1xu2 2 Q02223 100.0 8e-29 X-RAY
2004-11-09 PRO D:19 R:23 52.0 0.359 E -58.2 143.3 33.0 0.228 0.131 B:Q9D777:0.131
HOH
3.790
CB
O
PRO E:19 S:23 53.0 0.366 E -55.3 133.9 28.0 0.193 0.173 C:Q9D777:0.172
PRO F:19 T:23 59.0 0.407 E -60.3 143.8 40.0 0.276 0.131 A:Q9D777:0.131
6j7w 2 Q02223 100.0 1e-22 X-RAY
2019-02-06 PRO B:18 C:22 49.0 0.338 E -51.6 127.0 7.0 0.048 0.29 A:None:0.29
HOH
5.716
CD
O
PRO D:18 D:22 51.0 0.352 E -60.1 134.5 NA NA NA
1oqd 2 Q02223 100.0 2e-22 X-RAY
2003-05-13 PRO K:16 K:16 49.0 0.338 E -58.0 118.5 49.0 0.338 0.0
PRO L:16 L:16 51.0 0.352 E -57.6 118.3 51.0 0.352 0.0
PRO M:16 M:16 50.0 0.345 E -57.5 118.5 50.0 0.345 0.0
PRO N:16 N:16 65.0 0.448 -71.0 97.9 65.0 0.448 0.0
PRO O:16 O:16 49.0 0.338 E -57.7 117.6 49.0 0.338 0.0
PRO P:16 P:16 49.0 0.338 E -57.4 118.3 49.0 0.338 0.0
PRO Q:16 Q:16 50.0 0.345 E -57.1 118.0 50.0 0.345 0.0
PRO R:16 R:16 49.0 0.338 E -57.1 117.4 49.0 0.338 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q02223-f1 1 Q02223 100.0 1e-136 PRO A:23 A:23 59.0 0.407 E -67.2 136.6