Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr16 | 12059249 | . | C | A | CCDS10552.1:NM_001192.2:c.68cCt>cAt_NP_001183.2:p.23P>H | Homo sapiens TNF receptor superfamily member 17 (TNFRSF17), mRNA. |
---|---|---|---|---|---|---|---|
|
|
|
|
PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
4zfo | 1 | Q02223 | 100.0 | 3e-34 |
X-RAY |
2015-05-20 | PRO | A:23 | F:23 | 54.0 | 0.372 | E | -63.5 | 131.2 | 33.0 | 0.228 | 0.144 |
E:None:0.145 |
HOH |
3.459 |
CG |
O |
|
PRO | F:23 | K:23 | 65.0 | 0.448 | E | -64.3 | 135.8 | NA | NA | NA | |||||||||||||
2kn1 | 1 | Q02223 | 100.0 | 5e-30 |
NMR |
2011-02-23 | PRO | A:22 | A:22 | 48.0 | 0.331 | E | -79.9 | 147.8 | 48.0 | 0.331 | 0.0 | ||||||
1xu2 | 2 | Q02223 | 100.0 | 8e-29 |
X-RAY |
2004-11-09 | PRO | D:19 | R:23 | 52.0 | 0.359 | E | -58.2 | 143.3 | 33.0 | 0.228 | 0.131 |
B:Q9D777:0.131 |
HOH |
3.790 |
CB |
O |
|
PRO | E:19 | S:23 | 53.0 | 0.366 | E | -55.3 | 133.9 | 28.0 | 0.193 | 0.173 |
C:Q9D777:0.172 |
||||||||||||
PRO | F:19 | T:23 | 59.0 | 0.407 | E | -60.3 | 143.8 | 40.0 | 0.276 | 0.131 |
A:Q9D777:0.131 |
||||||||||||
6j7w | 2 | Q02223 | 100.0 | 1e-22 |
X-RAY |
2019-02-06 | PRO | B:18 | C:22 | 49.0 | 0.338 | E | -51.6 | 127.0 | 7.0 | 0.048 | 0.29 |
A:None:0.29 |
HOH |
5.716 |
CD |
O |
|
PRO | D:18 | D:22 | 51.0 | 0.352 | E | -60.1 | 134.5 | NA | NA | NA | |||||||||||||
1oqd | 2 | Q02223 | 100.0 | 2e-22 |
X-RAY |
2003-05-13 | PRO | K:16 | K:16 | 49.0 | 0.338 | E | -58.0 | 118.5 | 49.0 | 0.338 | 0.0 | ||||||
PRO | L:16 | L:16 | 51.0 | 0.352 | E | -57.6 | 118.3 | 51.0 | 0.352 | 0.0 | |||||||||||||
PRO | M:16 | M:16 | 50.0 | 0.345 | E | -57.5 | 118.5 | 50.0 | 0.345 | 0.0 | |||||||||||||
PRO | N:16 | N:16 | 65.0 | 0.448 | -71.0 | 97.9 | 65.0 | 0.448 | 0.0 | ||||||||||||||
PRO | O:16 | O:16 | 49.0 | 0.338 | E | -57.7 | 117.6 | 49.0 | 0.338 | 0.0 | |||||||||||||
PRO | P:16 | P:16 | 49.0 | 0.338 | E | -57.4 | 118.3 | 49.0 | 0.338 | 0.0 | |||||||||||||
PRO | Q:16 | Q:16 | 50.0 | 0.345 | E | -57.1 | 118.0 | 50.0 | 0.345 | 0.0 | |||||||||||||
PRO | R:16 | R:16 | 49.0 | 0.338 | E | -57.1 | 117.4 | 49.0 | 0.338 | 0.0 |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-q02223-f1 | 1 | Q02223 | 100.0 | 1e-136 | PRO | A:23 | A:23 | 59.0 | 0.407 | E | -67.2 | 136.6 |