Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr16 12059276 . C A CCDS10552.1:NM_001192.2:c.95aCt>aAt_NP_001183.2:p.32T>N Homo sapiens TNF receptor superfamily member 17 (TNFRSF17), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4zfo 1 Q02223 100.0 3e-34 X-RAY
 2015-05-20 THR A:32 F:32 103.0 0.736 S -132.5 68.4 46.0 0.329 0.407 D:None:0.407
 HOH
 2.652
 OG1
 O
THR F:32 K:32 106.0 0.757 S -131.5 58.1 NA NA NA
2kn1 1 Q02223 100.0 5e-30 NMR
 2011-02-23 THR A:31 A:31 101.0 0.721 30.3 53.4 101.0 0.721 0.0
1xu2 2 Q02223 100.0 8e-29 X-RAY
 2004-11-09 THR D:28 R:32 104.0 0.743 S -105.8 111.5 42.0 0.3 0.443 A:Q9D777:0.443
THR E:28 S:32 117.0 0.836 S -118.5 99.3 48.0 0.343 0.493 B:Q9D777:0.493
 HOH
 5.795
 O
 O
THR F:28 T:32 114.0 0.814 S -124.8 99.6 48.0 0.343 0.471 C:Q9D777:0.471
6j7w 2 Q02223 100.0 1e-22 X-RAY
 2019-02-06 THR B:27 C:31 110.0 0.786 S -125.5 58.4 109.0 0.779 0.007 A:None:0.007
 HOH
 9.850
 N
 O
THR D:27 D:31 109.0 0.779 S -138.2 64.4 NA NA NA
1oqd 2 Q02223 100.0 2e-22 X-RAY
 2003-05-13 THR K:25 K:25 125.0 0.893 19.8 83.8 100.0 0.714 0.179 A:Q9Y275:0.179
THR L:25 L:25 135.0 0.964 14.0 70.4 110.0 0.786 0.178 B:Q9Y275:0.179
THR M:25 M:25 112.0 0.8 S -115.6 56.7 51.0 0.364 0.436 C:Q9Y275:0.436
THR N:25 NA:NA DO NA DO DO DO NA NA NA
THR O:25 O:25 138.0 0.986 0.4 71.7 90.0 0.643 0.343 F:Q9Y275:0.343
THR P:25 P:25 126.0 0.9 -44.5 92.4 83.0 0.593 0.307 G:Q9Y275:0.307
THR Q:25 Q:25 122.0 0.871 S -14.9 109.5 66.0 0.471 0.4 I:Q9Y275:0.4
THR R:25 R:25 115.0 0.821 -75.1 118.3 59.0 0.421 0.4 J:Q9Y275:0.4

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q02223-f1 1 Q02223 100.0 1e-136 THR A:32 A:32 118.0 0.843 S -133.2 75.7