Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr16 12059296 . C A CCDS10552.1:NM_001192.2:c.115Cgt>Agt_NP_001183.2:p.39R>S Homo sapiens TNF receptor superfamily member 17 (TNFRSF17), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4zfo 1 Q02223 100.0 3e-34 X-RAY
 2015-05-20 ARG A:39 F:39 100.0 NA T -59.1 -46.7 100.0 NA NA HOH
 4.401
 O
 O
ARG F:39 K:39 102.0 NA T -57.4 -47.3 NA NA NA
2kn1 1 Q02223 100.0 5e-30 NMR
 2011-02-23 ARG A:38 A:38 197.0 0.876 H -80.5 -37.7 197.0 0.876 0.0
1xu2 2 Q02223 100.0 8e-29 X-RAY
 2004-11-09 ARG D:35 R:39 222.0 0.987 H -69.5 -47.3 222.0 0.987 0.0
ARG E:35 S:39 84.0 NA H -71.1 -36.6 84.0 NA NA
ARG F:35 T:39 93.0 NA T -68.8 -33.2 93.0 NA NA
6j7w 2 Q02223 100.0 1e-22 X-RAY
 2019-02-06 ARG B:34 C:38 87.0 NA T -51.7 -60.0 87.0 NA NA HOH
 7.165
 O
 O
ARG D:34 D:38 235.0 1.0 S -58.4 -65.2 NA NA NA
1oqd 2 Q02223 100.0 2e-22 X-RAY
 2003-05-13 ARG K:32 K:32 208.0 0.924 T -54.4 -65.3 208.0 0.924 0.0
ARG L:32 L:32 217.0 0.964 T -63.6 -49.6 217.0 0.964 0.0
ARG M:32 M:32 199.0 0.884 T -66.3 -30.3 199.0 0.884 0.0
ARG N:32 NA:NA DO NA DO DO DO NA NA NA
ARG O:32 O:32 205.0 0.911 H -62.5 -51.4 205.0 0.911 0.0
ARG P:32 P:32 199.0 0.884 H -43.7 -18.9 199.0 0.884 0.0
ARG Q:32 Q:32 158.0 0.702 H -32.2 -52.9 158.0 0.702 0.0
ARG R:32 R:32 221.0 0.982 H -40.8 -61.2 221.0 0.982 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q02223-f1 1 Q02223 100.0 1e-136 ARG A:39 A:39 219.0 0.973 H -62.4 -42.4