Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr16 31283280 . G A CCDS45470.1:NM_000632.3:c.671cGg>cAg_NP_000623.2:p.224R>Q Homo sapiens integrin subunit alpha M (ITGAM), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6rhw 3 P11215 100.0 2e-133 X-RAY
 2019-12-18 ARG C:82 C:208 124.0 0.551 -75.8 -177.6 4.0 0.018 0.533 B:A0A0D6HC73:0.524
A:A0A0D6HCK9:0.036
 DMS
DMS
DMS
DMS
MG
HOH
 6.631
5.721
7.971
4.917
5.023
6.523
 HD3
HH21
HG3
HA
C
HA
 H22
H11
S
H21
MG
O
1jlm 1 P11215 100.0 2e-131 X-RAY
 1997-01-11 ARG A:82 A:208 141.0 0.627 -86.0 -166.7 141.0 0.627 0.0 MN
HOH
 6.181
2.924
 C
NH2
 MN
O
4m76 2 P11215 98.97 2e-131 X-RAY
 2013-10-02 ARG B:85 B:208 133.0 0.591 -83.3 -161.4 29.0 0.129 0.462 A:P01024:0.462
 NI
HOH
 4.774
2.533
 C
NH2
 NI
O
4xw2 1 P11215 98.97 2e-131 X-RAY
 2016-01-13 ARG A:85 A:208 125.0 0.556 -78.4 -171.0 125.0 0.556 0.0 MG
SIM
HOH
 5.003
3.179
3.159
 C
CA
CD
 MG
O1B
O
1m1u 1 P11215 99.48 2e-131 X-RAY
 2002-08-07 ARG A:88 A:208 125.0 0.556 -81.9 -174.3 125.0 0.556 0.0 CA
HOH
 5.062
2.615
 C
NH2
 CA
O
1na5 1 P11215 100.0 6e-131 X-RAY
 2003-05-20 ARG A:81 A:208 118.0 0.524 -85.5 -166.8 118.0 0.524 0.0 HOH
 2.717
 NE
 O
1mf7 1 P11215 99.48 4e-130 X-RAY
 2003-05-20 ARG A:81 A:208 127.0 0.564 -95.3 -164.1 127.0 0.564 0.0 HOH
 2.492
 NH2
 O
1ido 1 P11215 100.0 3e-129 X-RAY
 1996-08-01 ARG A:82 A:208 129.0 0.573 -85.6 -175.4 129.0 0.573 0.0 MG
HOH
 4.947
2.341
 C
NH2
 MG
O
3q3g 3 P11215 100.0 3e-129 X-RAY
 2011-11-30 ARG C:77 G:208 139.0 0.618 -76.5 -177.3 0.0 0.0 0.618 B:None:0.347
A:None:0.418
 CA
EDO
HOH
 6.151
9.870
3.334
 C
C
CB
 CA
O1
O
ARG F:77 E:208 139.0 0.618 -76.4 -177.0 NA NA NA
ARG I:77 I:208 141.0 0.627 -76.1 -179.0 NA NA NA
ARG L:77 L:208 137.0 0.609 -75.5 -172.8 NA NA NA
1bhq 1 P11215 100.0 2e-128 X-RAY
 1998-11-04 ARG A:76 1:208 126.0 0.56 -124.0 -161.0 126.0 0.56 0.0 CD
HOH
 6.121
2.773
 C
CA
 CD
O
ARG B:76 2:508 146.0 0.649 -105.5 -162.2 146.0 0.649 0.0 CD
HOH
 5.943
4.609
 C
CA
 CD
O
1bho 1 P11215 100.0 2e-128 X-RAY
 1998-11-04 ARG A:77 1:208 123.0 0.547 -128.3 179.9 123.0 0.547 0.0 MG
HOH
 6.402
3.539
 C
CA
 MG
O
ARG B:77 2:508 146.0 0.649 -106.1 -163.2 146.0 0.649 0.0 MG
HOH
 6.780
4.621
 C
CB
 MG
O
1idn 1 P11215 100.0 2e-128 X-RAY
 1998-11-04 ARG A:77 1:208 131.0 0.582 -118.1 175.8 131.0 0.582 0.0 HOH
 3.161
 CA
 O
ARG B:77 2:508 145.0 0.644 -105.9 -163.6 145.0 0.644 0.0 HOH
 5.391
 C
 O
3qa3 3 P11215 99.47 6e-128 X-RAY
 2011-11-30 ARG C:77 G:208 140.0 0.622 -76.8 -175.5 0.0 0.0 0.622 B:None:0.32
A:None:0.418
 EDO
CA
GOL
HOH
 5.181
6.087
6.909
3.905
 N
O
CD
NH1
 O2
CA
O2
O
ARG F:77 E:208 142.0 0.631 -76.8 -176.2 NA NA NA
ARG I:77 I:208 145.0 0.644 -76.8 -175.6 NA NA NA
ARG L:77 L:208 141.0 0.627 -76.4 -175.4 NA NA NA
1n9z 1 P11215 98.44 5e-127 X-RAY
 2003-05-20 ARG A:81 A:208 121.0 0.538 -67.3 -178.0 121.0 0.538 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p11215-f1 1 P11215 99.91 0.0 ARG A:224 A:224 129.0 0.573 -77.0 -172.5