Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr16 31286964 . T A CCDS45470.1:NM_000632.3:c.953tTt>tAt_NP_000623.2:p.318F>Y Homo sapiens integrin subunit alpha M (ITGAM), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6rhw 3 P11215 100.0 2e-133 X-RAY
 2019-12-18 PHE C:176 NA:NA DO NA DO DO DO NA NA NA
1jlm 1 P11215 100.0 2e-131 X-RAY
 1997-01-11 PHE A:176 A:302 8.0 0.038 G -62.6 -21.9 8.0 0.038 0.0 MN
HOH
 7.339
3.006
 CZ
N
 MN
O
4m76 2 P11215 98.97 2e-131 X-RAY
 2013-10-02 PHE B:179 B:302 155.0 0.738 G -81.0 -14.4 155.0 0.738 0.0
4xw2 1 P11215 98.97 2e-131 X-RAY
 2016-01-13 PHE A:179 A:302 67.0 0.319 S -118.6 27.1 67.0 0.319 0.0 HOH
 3.800
 CA
 O
1m1u 1 P11215 99.48 2e-131 X-RAY
 2002-08-07 PHE A:182 A:302 154.0 0.733 T -59.1 -0.8 154.0 0.733 0.0 HOH
 6.313
 O
 O
1na5 1 P11215 100.0 6e-131 X-RAY
 2003-05-20 PHE A:175 A:302 5.0 0.024 G -67.3 -29.7 5.0 0.024 0.0 HOH
 2.769
 O
 O
1mf7 1 P11215 99.48 4e-130 X-RAY
 2003-05-20 PHE A:175 A:302 7.0 0.033 G -68.1 -33.8 7.0 0.033 0.0 HOH
 2.817
 O
 O
1ido 1 P11215 100.0 3e-129 X-RAY
 1996-08-01 PHE A:176 A:302 159.0 0.757 T -64.0 -13.5 159.0 0.757 0.0 HOH
 2.676
 O
 O
3q3g 3 P11215 100.0 3e-129 X-RAY
 2011-11-30 PHE C:171 G:302 12.0 0.057 S -79.7 -29.6 12.0 0.057 0.0 CA
EDO
HOH
 7.753
7.863
2.681
 CZ
CE2
O
 CA
O1
O
PHE F:171 E:302 11.0 0.052 S -71.5 -26.9 NA NA NA
PHE I:171 I:302 11.0 0.052 G -68.2 -21.4 NA NA NA
PHE L:171 L:302 11.0 0.052 S -71.7 -28.3 NA NA NA
1bhq 1 P11215 100.0 2e-128 X-RAY
 1998-11-04 PHE A:170 1:302 13.0 0.062 T -80.0 -13.9 13.0 0.062 0.0 CD
CD
HOH
 7.065
4.648
3.302
 CZ
N
CE1
 CD
CD
O
PHE B:170 2:602 11.0 0.052 S -51.3 -43.9 11.0 0.052 0.0 CD
HOH
 7.795
3.490
 CZ
CE2
 CD
O
1bho 1 P11215 100.0 2e-128 X-RAY
 1998-11-04 PHE A:171 1:302 11.0 0.052 S -72.3 -34.3 11.0 0.052 0.0 MG
HOH
 7.041
3.016
 CZ
N
 MG
O
PHE B:171 2:602 10.0 0.048 S -42.6 -60.7 10.0 0.048 0.0 MG
HOH
 7.125
3.921
 CZ
CD2
 MG
O
1idn 1 P11215 100.0 2e-128 X-RAY
 1998-11-04 PHE A:171 1:302 11.0 0.052 G -67.0 -25.6 11.0 0.052 0.0 HOH
 2.842
 CE1
 O
PHE B:171 2:602 7.0 0.033 S -53.5 -45.7 7.0 0.033 0.0 HOH
 3.725
 CE2
 O
3qa3 3 P11215 99.47 6e-128 X-RAY
 2011-11-30 PHE C:171 G:302 12.0 0.057 S -69.9 -27.0 12.0 0.057 0.0 CA
HOH
 8.040
6.504
 CZ
CE2
 CA
O
PHE F:171 E:302 13.0 0.062 S -71.0 -18.8 NA NA NA
PHE I:171 I:302 10.0 0.048 S -78.5 -1.4 NA NA NA
PHE L:171 L:302 12.0 0.057 S -72.0 -15.6 NA NA NA
1n9z 1 P11215 98.44 5e-127 X-RAY
 2003-05-20 PHE A:175 A:302 133.0 0.633 T -84.5 27.5 133.0 0.633 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p11215-f1 1 P11215 99.91 0.0 PHE A:318 A:318 14.0 0.067 T -67.1 -19.1