Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr16 31439340 . G A CCDS10712.1:NM_005205.3:c.206aCc>aTc_NP_005196.1:p.69T>I Homo sapiens cytochrome c oxidase subunit 6A2 (COX6A2), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2y69 7 P07471 80.41 3e-52 X-RAY
 2011-02-23 THR G:69 G:57 139.0 0.993 S -106.5 -11.3 NA NA NA
THR T:69 T:57 136.0 0.971 S -104.0 -14.6 136.0 0.971 0.0 HOH
 6.695
 N
 O
7o37 19 P43023 81.18 4e-47 EM
 2021-10-13 THR CA:57 g:57 132.0 0.943 S -106.4 -56.2 57.0 0.407 0.536 W:P00397:0.536
7o3c 19 P43023 81.18 4e-47 EM
 2021-10-13 THR CA:57 g:57 138.0 0.986 S -84.9 -4.7 47.0 0.336 0.65 W:P00397:0.65
7o3e 17 P43023 81.18 4e-47 EM
 2021-10-13 THR W:57 g:57 127.0 0.907 S -99.2 -57.0 64.0 0.457 0.45 Q:P00397:0.45
5j4z 68 W5PI52 83.13 3e-46 EM
 2016-09-21 THR EC:57 BG:57 109.0 NA S -92.4 -70.1 88.0 NA NA YB:O78749:NA
5j7y 68 W5PI52 83.13 3e-46 EM
 2016-09-21 THR EC:57 BG:57 110.0 NA S -92.4 -70.1 89.0 NA NA YB:O78749:NA
1v54 7 P07471 81.18 2e-45 X-RAY
 2003-12-23 THR G:57 G:57 138.0 0.986 S -102.3 -15.0 59.0 0.421 0.565 A:P00396:0.564
 HOH
 2.699
 O
 O
THR T:57 T:57 138.0 0.986 S -101.7 -16.7 58.0 0.414 0.572 N:P00396:0.571
 HOH
 2.737
 OG1
 O
1v55 7 P07471 81.18 2e-45 X-RAY
 2003-12-23 THR G:57 G:57 138.0 0.986 S -100.3 -16.2 58.0 0.414 0.572 A:P00396:0.571
 HOH
 2.577
 O
 O
THR T:57 T:57 138.0 0.986 S -101.2 -18.6 57.0 0.407 0.579 N:P00396:0.579
 HOH
 2.823
 O
 O
2dyr 7 P07471 81.18 2e-45 X-RAY
 2007-04-03 THR G:57 G:57 138.0 0.986 S -101.5 -14.9 59.0 0.421 0.565 A:P00396:0.564
 HOH
 2.748
 O
 O
THR T:57 T:57 137.0 0.979 S -101.4 -15.6 57.0 0.407 0.572 N:P00396:0.571
 HOH
 2.705
 OG1
 O
2dys 7 P07471 81.18 2e-45 X-RAY
 2007-04-03 THR G:57 G:57 138.0 0.986 S -101.2 -15.6 59.0 0.421 0.565 A:P00396:0.564
 HOH
 2.782
 OG1
 O
THR T:57 T:57 142.0 1.0 S -101.3 -17.3 60.0 0.429 0.571 N:P00396:0.586
 HOH
 2.495
 OG1
 O
2eij 7 P07471 81.18 2e-45 X-RAY
 2007-05-29 THR G:57 G:57 138.0 0.986 S -102.4 -15.5 58.0 0.414 0.572 A:P00396:0.571
 HOH
 2.713
 OG1
 O
THR T:57 T:57 138.0 0.986 S -102.7 -18.7 56.0 0.4 0.586 N:P00396:0.586
 HOH
 2.693
 OG1
 O
2eik 7 P07471 81.18 2e-45 X-RAY
 2007-05-29 THR G:57 G:57 138.0 0.986 S -104.3 -13.1 58.0 0.414 0.572 A:P00396:0.571
 HOH
 2.851
 OG1
 O
THR T:57 T:57 138.0 0.986 S -103.7 -15.9 56.0 0.4 0.586 N:P00396:0.586
 HOH
 2.702
 OG1
 O
2eil 7 P07471 81.18 2e-45 X-RAY
 2007-05-29 THR G:57 G:57 140.0 1.0 S -102.4 -17.0 62.0 0.443 0.557 A:P00396:0.557
 HOH
 2.865
 OG1
 O
THR T:57 T:57 138.0 0.986 S -103.0 -18.9 58.0 0.414 0.572 N:P00396:0.571
 HOH
 2.781
 OG1
 O
2eim 7 P07471 81.18 2e-45 X-RAY
 2007-05-29 THR G:57 G:57 141.0 1.0 S -100.0 -21.4 60.0 0.429 0.571 A:P00396:0.579
 HOH
 3.284
 OG1
 O
THR T:57 T:57 140.0 1.0 S -101.4 -21.5 58.0 0.414 0.586 N:P00396:0.586
 HOH
 3.223
 OG1
 O
2ein 7 P07471 81.18 2e-45 X-RAY
 2007-05-29 THR G:57 G:57 142.0 1.0 S -90.4 -12.0 62.0 0.443 0.557 A:P00396:0.571
 HOH
 2.762
 OG1
 O
THR T:57 T:57 145.0 1.0 S -88.0 -14.8 58.0 0.414 0.586 N:P00396:0.621
 HOH
 2.873
 OG1
 O
2zxw 7 P07471 81.18 2e-45 X-RAY
 2009-02-24 THR G:57 G:57 137.0 0.979 S -109.2 -10.0 59.0 0.421 0.558 A:P00396:0.557
 HOH
 2.697
 O
 O
THR T:57 T:57 139.0 0.993 S -107.6 -12.9 NA NA NA
3abk 7 P07471 81.18 2e-45 X-RAY
 2010-03-09 THR G:57 G:57 139.0 0.993 S -98.0 -15.9 46.0 0.329 0.664 A:P00396:0.664
 HOH
 2.743
 O
 O
THR T:57 T:57 139.0 0.993 S -102.4 -21.5 NA NA NA
3abl 7 P07471 81.18 2e-45 X-RAY
 2010-01-19 THR G:57 G:57 140.0 1.0 S -107.6 -11.6 61.0 0.436 0.564 A:P00396:0.564
 HOH
 2.775
 OG1
 O
THR T:57 T:57 138.0 0.986 S -95.9 -17.4 NA NA NA
3abm 7 P07471 81.18 2e-45 X-RAY
 2010-01-19 THR G:57 G:57 139.0 0.993 S -100.3 -11.2 61.0 0.436 0.557 A:P00396:0.557
 HOH
 2.666
 OG1
 O
THR T:57 T:57 137.0 0.979 S -97.6 -13.5 NA NA NA
3ag1 7 P07471 81.18 2e-45 X-RAY
 2010-04-28 THR G:57 G:57 138.0 0.986 S -100.7 -16.6 59.0 0.421 0.565 A:P00396:0.564
 HOH
 2.659
 OG1
 O
THR T:57 T:57 139.0 0.993 S -89.2 -19.3 NA NA NA
3ag2 7 P07471 81.18 2e-45 X-RAY
 2010-04-28 THR G:57 G:57 139.0 0.993 S -103.6 -14.6 60.0 0.429 0.564 A:P00396:0.564
 EDO
EDO
HOH
 5.925
9.605
2.598
 CG2
N
O
 C2
C1
O
THR T:57 T:57 134.0 0.957 S -99.1 -13.6 NA NA NA
3ag3 7 P07471 81.18 2e-45 X-RAY
 2010-04-28 THR G:57 G:57 141.0 1.0 S -102.5 -14.7 59.0 0.421 0.579 A:P00396:0.586
 HOH
 2.742
 O
 O
THR T:57 T:57 138.0 0.986 S -100.5 -13.2 NA NA NA
3ag4 7 P07471 81.18 2e-45 X-RAY
 2010-04-28 THR G:57 G:57 138.0 0.986 S -109.8 -11.7 58.0 0.414 0.572 A:P00396:0.571
 HOH
 2.548
 O
 O
THR T:57 T:57 136.0 0.971 S -102.3 -14.7 NA NA NA
3asn 7 P07471 81.18 2e-45 X-RAY
 2011-08-03 THR G:57 G:57 140.0 1.0 S -100.0 -16.9 55.0 0.393 0.607 A:P00396:0.607
 HOH
 2.680
 OG1
 O
THR T:57 T:57 138.0 0.986 S -99.3 -19.1 NA NA NA
3aso 7 P07471 81.18 2e-45 X-RAY
 2011-08-03 THR G:57 G:57 138.0 0.986 S -104.5 -17.1 55.0 0.393 0.593 A:P00396:0.593
 HOH
 2.635
 OG1
 O
THR T:57 T:57 137.0 0.979 S -97.5 -21.0 NA NA NA
3wg7 7 P07471 81.18 2e-45 X-RAY
 2014-04-30 THR G:57 G:57 140.0 1.0 S -102.2 -14.7 61.0 0.436 0.564 A:P00396:0.564
 HOH
 2.776
 OG1
 O
THR T:57 T:57 136.0 0.971 S -98.1 -20.6 NA NA NA
3x2q 7 P07471 81.18 2e-45 X-RAY
 2015-06-10 THR G:57 G:57 140.0 1.0 S -107.8 -14.5 60.0 0.429 0.571 A:P00396:0.571
 HOH
 3.184
 OG1
 O
THR T:57 T:57 137.0 0.979 S -97.6 -17.6 NA NA NA
5b1a 7 P07471 81.18 2e-45 X-RAY
 2016-09-14 THR G:57 G:57 139.0 0.993 S -101.7 -17.8 61.0 0.436 0.557 A:P00396:0.557
 HOH
 2.727
 O
 O
THR T:57 T:57 138.0 0.986 S -104.6 -11.8 NA NA NA
5b1b 7 P07471 81.18 2e-45 X-RAY
 2016-09-14 THR G:57 G:57 140.0 1.0 S -101.6 -14.5 61.0 0.436 0.564 A:P00396:0.564
 HOH
 2.718
 OG1
 O
THR T:57 T:57 138.0 0.986 S -103.1 -15.0 NA NA NA
5b3s 7 P07471 81.18 2e-45 X-RAY
 2017-03-22 THR G:57 G:57 139.0 0.993 S -102.9 -16.1 60.0 0.429 0.564 A:P00396:0.564
 EDO
HOH
 9.875
2.676
 CG2
O
 C2
O
THR T:57 T:57 140.0 1.0 S -103.2 -15.8 NA NA NA
5w97 7 P07471 81.18 2e-45 X-RAY
 2017-08-09 THR G:57 G:57 135.0 0.964 S -87.3 -15.7 54.0 0.386 0.578 A:P00396:0.579
 HOH
 2.742
 OG1
 O
THR T:57 g:57 140.0 1.0 S -91.5 -24.8 60.0 0.429 0.571 N:P00396:0.571
 HOH
 2.800
 OG1
 O
5wau 7 P07471 81.18 2e-45 X-RAY
 2017-08-09 THR G:57 G:57 138.0 0.986 S -96.8 -22.6 44.0 0.314 0.672 A:P00396:0.671
 HOH
 2.696
 O
 O
THR T:57 g:57 138.0 0.986 S -97.4 -22.7 47.0 0.336 0.65 N:P00396:0.65
 HOH
 2.727
 O
 O
5x19 7 P07471 81.18 2e-45 X-RAY
 2017-08-09 THR G:57 G:57 137.0 0.979 S -106.1 -14.6 49.0 0.35 0.629 A:P00396:0.629
 EDO
HOH
 8.483
2.781
 CG2
OG1
 O2
O
THR T:57 T:57 139.0 0.993 S -96.1 -19.1 NA NA NA
5x1b 7 P07471 81.18 2e-45 X-RAY
 2017-08-09 THR G:57 G:57 138.0 0.986 S -118.6 -13.7 48.0 0.343 0.643 A:P00396:0.643
 HOH
 2.881
 OG1
 O
THR T:57 T:57 139.0 0.993 S -96.2 -13.5 NA NA NA
5x1f 7 P07471 81.18 2e-45 X-RAY
 2017-08-09 THR G:57 G:57 139.0 0.993 S -104.0 -16.1 43.0 0.307 0.686 A:P00396:0.686
 HOH
 2.856
 OG1
 O
THR T:57 T:57 142.0 1.0 S -98.8 -25.5 NA NA NA
5xdq 7 P07471 81.18 2e-45 X-RAY
 2017-07-12 THR G:57 G:57 139.0 0.993 S -107.6 -16.2 61.0 0.436 0.557 A:P00396:0.557
 EDO
EDO
EDO
HOH
 6.019
8.306
9.915
2.673
 CG2
CG2
CG2
O
 C2
O2
C1
O
THR T:57 T:57 138.0 0.986 S -101.1 -19.9 NA NA NA
5xdx 7 P07471 81.18 2e-45 X-RAY
 2018-02-07 THR G:57 G:57 139.0 0.993 S -104.4 -18.7 57.0 0.407 0.586 A:P00396:0.586
 EDO
HOH
 9.002
2.572
 CG2
O
 C1
O
THR T:57 T:57 139.0 0.993 S -103.1 -22.1 NA NA NA
5z84 7 P07471 81.18 2e-45 X-RAY
 2018-08-15 THR G:57 G:57 138.0 0.986 S -109.8 -12.9 60.0 0.429 0.557 A:P00396:0.557
 EDO
EDO
EDO
HOH
 6.248
5.730
7.831
2.742
 CG2
CG2
O
OG1
 C2
C1
C2
O
THR T:57 T:57 138.0 0.986 S -106.3 -15.4 NA NA NA
5z85 7 P07471 81.18 2e-45 X-RAY
 2018-08-15 THR G:57 G:57 138.0 0.986 S -104.9 -13.9 59.0 0.421 0.565 A:P00396:0.564
 EDO
EDO
HOH
 5.949
7.765
2.686
 CG2
O
OG1
 C2
O2
O
THR T:57 T:57 137.0 0.979 S -105.7 -16.8 NA NA NA
5z86 7 P07471 81.18 2e-45 X-RAY
 2018-08-15 THR G:57 G:57 139.0 0.993 S -105.8 -17.9 60.0 0.429 0.564 A:P00396:0.564
 EDO
EDO
EDO
HOH
 6.090
6.078
7.714
2.744
 CG2
CG2
O
OG1
 O2
C2
C2
O
THR T:57 T:57 138.0 0.986 S -102.5 -19.2 NA NA NA
5zco 7 P07471 81.18 2e-45 X-RAY
 2018-08-15 THR G:57 G:57 139.0 0.993 S -112.4 -14.9 60.0 0.429 0.564 A:P00396:0.564
 EDO
EDO
HOH
 9.369
7.447
2.727
 CG2
O
O
 O1
C2
O
THR T:57 T:57 138.0 0.986 S -107.5 -15.2 NA NA NA
5zcp 7 P07471 81.18 2e-45 X-RAY
 2018-08-15 THR G:57 G:57 139.0 0.993 S -106.5 -13.2 60.0 0.429 0.564 A:P00396:0.564
 EDO
EDO
HOH
 9.451
7.567
2.711
 CG2
O
O
 O1
C2
O
THR T:57 T:57 137.0 0.979 S -104.8 -15.0 NA NA NA
5zcq 7 P07471 81.18 2e-45 X-RAY
 2018-08-15 THR G:57 G:57 140.0 1.0 S -100.1 -14.9 60.0 0.429 0.571 A:P00396:0.571
 EDO
EDO
EDO
EDO
HOH
 6.160
5.516
9.845
7.474
2.726
 CG2
CG2
CG2
O
OG1
 C2
C2
C2
O2
O
THR T:57 T:57 139.0 0.993 S -101.6 -15.4 NA NA NA
6j8m 7 P07471 81.18 2e-45 X-RAY
 2019-06-26 THR G:57 G:57 139.0 0.993 S -104.9 -15.1 60.0 0.429 0.564 A:P00396:0.564
 HOH
 2.628
 O
 O
THR T:57 T:57 137.0 0.979 S -104.0 -17.6 NA NA NA
6jy3 7 P07471 81.18 2e-45 X-RAY
 2019-09-18 THR G:57 G:57 138.0 0.986 S -101.5 -21.3 59.0 0.421 0.565 A:P00396:0.564
 HOH
 2.680
 O
 O
6jy4 7 P07471 81.18 2e-45 X-RAY
 2019-09-18 THR G:57 G:57 136.0 0.971 S -101.1 -19.5 56.0 0.4 0.571 A:P00396:0.571
 HOH
 2.766
 OG1
 O
6nkn 7 P07471 81.18 2e-45 X-RAY
 2019-03-20 THR G:57 G:57 140.0 1.0 S -81.7 -16.9 49.0 0.35 0.65 A:P00396:0.65
 HOH
 2.785
 OG1
 O
THR T:57 T:57 140.0 1.0 S -100.2 -18.1 60.0 0.429 0.571 N:P00396:0.571
 HOH
 4.412
 N
 O
6nmf 7 P07471 81.18 2e-45 X-RAY
 2019-03-13 THR G:57 G:57 136.0 0.971 S -73.4 -25.2 56.0 0.4 0.571 A:P00396:0.571
 HOH
 2.694
 OG1
 O
THR T:57 T:57 139.0 0.993 S -102.2 -24.7 60.0 0.429 0.564 N:P00396:0.564
 HOH
 2.711
 OG1
 O
6nmp 7 P07471 81.18 2e-45 X-RAY
 2019-03-13 THR G:57 G:57 138.0 0.986 S -72.5 -24.6 58.0 0.414 0.572 A:P00396:0.571
 HOH
 2.626
 OG1
 O
THR T:57 T:57 138.0 0.986 S -105.7 -21.2 55.0 0.393 0.593 N:P00396:0.593
 HOH
 2.797
 OG1
 O
7coh 7 P07471 81.18 2e-45 X-RAY
 2021-04-07 THR G:57 G:57 140.0 1.0 S -104.6 -14.8 60.0 0.429 0.571 A:P00396:0.571
 HOH
 2.707
 O
 O
THR T:57 T:57 137.0 0.979 S -101.5 -17.1 NA NA NA
7ev7 7 P07471 81.18 2e-45 X-RAY
 2021-07-14 THR G:57 G:57 140.0 1.0 S -101.3 -16.5 60.0 0.429 0.571 A:P00396:0.571
 EDO
EDO
EDO
HOH
 6.005
9.958
7.870
2.734
 CG2
CG2
O
OG1
 C2
C1
C2
O
THR T:57 T:57 138.0 0.986 S -102.2 -16.7 NA NA NA
1occ 7 P07471 81.93 8e-45 X-RAY
 1996-12-07 THR G:57 G:57 134.0 0.957 S -110.8 -12.6 61.0 0.436 0.521 A:P00396:0.521
THR T:57 T:57 134.0 0.957 S -110.7 -12.6 62.0 0.443 0.514 N:P00396:0.514
1oco 7 P07471 81.93 8e-45 X-RAY
 1999-07-22 THR G:57 G:57 135.0 0.964 S -108.0 -10.0 52.0 0.371 0.593 A:P00396:0.593
THR T:57 T:57 138.0 0.986 S -107.7 -11.9 56.0 0.4 0.586 N:P00396:0.586
1ocr 7 P07471 81.93 8e-45 X-RAY
 1999-07-29 THR G:57 G:57 136.0 0.971 S -99.8 -15.4 50.0 0.357 0.614 A:P00396:0.614
THR T:57 T:57 138.0 0.986 S -102.0 -16.8 52.0 0.371 0.615 N:P00396:0.614
1ocz 7 P07471 81.93 8e-45 X-RAY
 1999-07-22 THR G:57 G:57 135.0 0.964 S -102.8 -12.0 49.0 0.35 0.614 A:P00396:0.614
THR T:57 T:57 137.0 0.979 S -103.0 -13.9 51.0 0.364 0.615 N:P00396:0.614
2occ 7 P07471 81.93 8e-45 X-RAY
 1999-01-13 THR G:57 G:57 135.0 0.964 S -87.9 -18.8 53.0 0.379 0.585 A:P00396:0.586
THR T:57 T:57 135.0 0.964 S -89.2 -22.0 NA NA NA
2ybb 26 P07471 81.93 8e-45 EM
 2011-10-19 THR Z:57 R:57 136.0 0.971 S -110.9 -12.6 63.0 0.45 0.521 T:P00396:0.521
5gpn 40 P07471 81.93 8e-45 EM
 2017-04-05 THR AB:57 4:57 112.0 NA S -110.6 -12.7 88.0 NA NA HB:P00396:NA
5gup 66 ? 81.93 8e-45 EM
 2017-03-29 THR AC:57 Aq:57 135.0 0.964 S -110.7 -12.6 62.0 0.443 0.521 UB:None:0.521
5iy5 7 P07471 81.93 8e-45 X-RAY
 2017-01-11 THR G:57 G:57 140.0 1.0 S -107.7 -12.8 61.0 0.436 0.564 A:P00396:0.564
 HOH
 2.681
 O
 O
THR T:57 T:57 134.0 0.957 S -108.0 -15.1 NA NA NA
5luf 18 P07471 81.93 8e-45 EM
 2016-11-30 THR CA:57 4:57 137.0 0.979 S -110.8 -12.7 62.0 0.443 0.536 W:P00396:0.536
5xth 51 P07471 81.93 8e-45 EM
 2017-09-13 THR ZA:57 3:57 135.0 0.964 S -110.8 -12.7 61.0 0.436 0.528 TA:P00396:0.529
5xti 51 P07471 81.93 8e-45 EM
 2017-09-13 THR ZA:57 3:57 136.0 0.971 S -110.8 -12.7 61.0 0.436 0.535 TA:P00396:0.536
THR BE:57 B3:57 136.0 0.971 S -110.8 -12.7 62.0 0.443 0.528 VD:P00396:0.529
6juw 7 P07471 81.93 8e-45 X-RAY
 2020-03-25 THR G:57 G:57 140.0 1.0 S -100.2 -14.7 60.0 0.429 0.571 A:P00396:0.571
 HOH
 2.618
 O
 O
THR T:57 T:57 138.0 0.986 S -96.1 -15.5 58.0 0.414 0.572 N:P00396:0.571
 EDO
EDO
HOH
 6.145
7.719
2.727
 CG2
O
OG1
 C1
O2
O
7cp5 7 P07471 81.93 8e-45 X-RAY
 2021-07-21 THR G:57 G:57 140.0 1.0 S -102.7 -14.5 61.0 0.436 0.564 A:P00396:0.564
 EDO
EDO
HOH
 6.088
9.960
2.722
 CG2
CG2
OG1
 C2
C1
O
THR T:57 T:57 136.0 0.971 S -103.8 -14.5 39.0 0.279 0.692 N:P00396:0.693
 EDO
EDO
EDO
HOH
 6.156
7.818
9.497
2.742
 CG2
O
N
OG1
 C1
C2
C1
O
7d5w 7 P07471 81.93 8e-45 X-RAY
 2021-07-21 THR G:57 G:57 139.0 0.993 S -99.8 -14.7 61.0 0.436 0.557 A:P00396:0.557
 HOH
 2.698
 OG1
 O
THR T:57 T:57 137.0 0.979 S -101.3 -12.9 41.0 0.293 0.686 N:P00396:0.686
 EDO
EDO
EDO
HOH
 6.128
7.870
9.626
2.780
 CG2
O
N
O
 C1
C2
C1
O
7d5x 7 P07471 81.93 8e-45 X-RAY
 2021-07-21 THR G:57 G:57 139.0 0.993 S -99.6 -15.3 61.0 0.436 0.557 A:P00396:0.557
 EDO
EDO
HOH
 5.859
9.873
2.696
 CG2
CG2
OG1
 C2
C2
O
THR T:57 T:57 137.0 0.979 S -99.9 -17.1 59.0 0.421 0.558 N:P00396:0.557
 EDO
EDO
EDO
HOH
 5.939
7.811
9.752
2.727
 CG2
O
N
OG1
 C1
C2
C1
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q02221-f1 1 Q02221 100.0 1e-67 THR A:69 A:69 140.0 1.0 S -92.9 -27.0